Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g1182 ATGTCTTCTCAATTTAATCCTAATATTGTTCTGTTGTTTCTCATTATTCTCCTCTCAATTCTTAACCCTTCCCATCAATATCTTCTCAATATCAAGAACCCTAAACTCAGAAAAGCTTACACAGCTCTTCAAGCATGGAAGCACACTATCACTTCTGATCCCCTAGGCTTCACCTCGAACTGGAACAATCTCGAAGTCTGCAACTACACCGGAATCTACTGTGCTCGGTTGCCGGAGTATCCTCACTCGGTCACCGTCGCCGGAGTGGACCTCAACAGTGCTAACATATCCGGTTCATTGCCGGAAGAACTCGGCCTTTTAATGGACCTCTCTATCTTCCACATCAACTCAAACCGCTTCATTGGAACCCTCCCTAAAAGCTTTAGCTCCATGAACCGTCTCTTCGAGCTCGACGTTAGTAACAATAAACTCTCTGGTTCTTTTCCTAATGTCGTTTTGAATCTCCCTTCATTGCGTTACTTAAATATAAGGTTCAATGATTTCCAAGGCAATGTTCCTTCTAGCTTATTCGACATGAAACTCGACGCCATTTTGATAAACGACAATAAGTTTCAGTTCACATTGCCTGAGAACCTCGGAAGTTCTCCTGCTTCTGTGATTGTAATGGCGAATAATGATCTTAAAGGTTCTATTATTCCTCCTAGTGTGGCCAAAATGAAGAATACACTAAATGAGATTGTAGTTTCAAATACTGGATTAAGTGGTCGTTTGCCTAAAGAAATTGGGGATTTAGTCAACTTGACGGTTATGGATTTGAGCTCTAACAATTTTGTTGGGTCGTTGCCGGAGTCCATGGCTGGGATGAAGAGCTTGGAGGTGTTGAATGTGGAGCATAACAAATTTTCCGTTAATCCCAATGAAGAAGAGGCCGTCGATGTTGGGAGTGCAGCGGCCGGTGGTGAATGGAATAGAATAAGAAGAAGAGGGAGCGCGCGACTTCTTAGAAATCTTTTGAGTGGCACCGCCGGCGGAAACGTTGTGGAGGGTGCCGCCGTGGGTCCAATAGCGACGGAAAGACTTGCACAAGTAACACGGCTGGAAAAGGAGGGAACCCCGAGCAGTGTTGAGGCCTGTAAGCAAAACTCAATGCATAATAGCCTCCATCTCCAGTCTCGGGTAGGCAAAGCAAGCTGTGATTATAAGTCTGAGCTTTTACAAGCTAGAATACCATTGGCGACTGCCCCAGCTTCAGCTGAAGGAGAAAAAATGTCTCTGAAAGATCAGGGCAATGAGTTTTTCAAGTCAGGAAAGTATCTCAAAGCTGCAGCACTTTACACTCAAGCTATCAAGCAAGATCCTTCAAACCCTACTCTTTATAGTAACCGTGCTGCTGCATTGCTGCAACTGGATAAGCTTACCAAAGCTCTTGAGGATGCTGAGATGACAATAAAACTAAAACCTGAATGGGAAAAGGGGCATTTTAGGAAAGGATGCGTACTTGAGGCCATGAAACGATATGATGATGCCTTGGCTGCCTTTCAGATGGCTTTGCGGTATAACCCACAAAGTCAGGAAGTATCAAAAAAGATAAGGAAGATAAACCAACTAGCAAAAGATAGAGATCGAGCACAAGAAGTGGAGAATAAAAGATCTAATGTTGACATGACGAAACATTTAAATATATTGAAACCTGAATTGTCTGGAAATTATGGATCTGAAGAATGCTGGAAAGACTTGTTTTCTTTCCTTGTTGAGACCATGGAGACAGCTGTAAAATCATGGCATGGATCTTCCACAGTGGATCCTAGAGTCTACTTCCTTCTTGATAAAGAAAAGACACAGACTGATAAATATCCCCCGGTTGTTAATATTGATAAGGCCTTTGAATCACCACATACACATGGAAGCTGTTTTTCATTTCTCAGGCAATATGCTGAGGACTCCTTTGCCAGAGCAGCTTGCTTAGTGGTTCCCAAAAGCATAATTGCTTATCCGCAGGTCTGGAAAGGCCAAGGATCAAGGAGATGGAAACATGGGCAGAATGATGGTTTCTTTGTTCAATTTGAATCACCTTCACTAAGAAAGCTGTGGTTTATTCCCAGTTCCAATGAAGTGGGGCAAACATTATGCAGGGACCCAGAAGCCTTGGACATTGGTGCTCATGAAATTCTTCCACGTATATTCAAAGAAAATCTTCCTAGTTCCTAG 2169 0.4302 MSSQFNPNIVLLFLIILLSILNPSHQYLLNIKNPKLRKAYTALQAWKHTITSDPLGFTSNWNNLEVCNYTGIYCARLPEYPHSVTVAGVDLNSANISGSLPEELGLLMDLSIFHINSNRFIGTLPKSFSSMNRLFELDVSNNKLSGSFPNVVLNLPSLRYLNIRFNDFQGNVPSSLFDMKLDAILINDNKFQFTLPENLGSSPASVIVMANNDLKGSIIPPSVAKMKNTLNEIVVSNTGLSGRLPKEIGDLVNLTVMDLSSNNFVGSLPESMAGMKSLEVLNVEHNKFSVNPNEEEAVDVGSAAAGGEWNRIRRRGSARLLRNLLSGTAGGNVVEGAAVGPIATERLAQVTRLEKEGTPSSVEACKQNSMHNSLHLQSRVGKASCDYKSELLQARIPLATAPASAEGEKMSLKDQGNEFFKSGKYLKAAALYTQAIKQDPSNPTLYSNRAAALLQLDKLTKALEDAEMTIKLKPEWEKGHFRKGCVLEAMKRYDDALAAFQMALRYNPQSQEVSKKIRKINQLAKDRDRAQEVENKRSNVDMTKHLNILKPELSGNYGSEECWKDLFSFLVETMETAVKSWHGSSTVDPRVYFLLDKEKTQTDKYPPVVNIDKAFESPHTHGSCFSFLRQYAEDSFARAACLVVPKSIIAYPQVWKGQGSRRWKHGQNDGFFVQFESPSLRKLWFIPSSNEVGQTLCRDPEALDIGAHEILPRIFKENLPSS 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g1182 722 SMART tpr_5 477 510 IPR019734 GO:0005515
Lele19g1182 722 SMART tpr_5 443 476 IPR019734 GO:0005515
Lele19g1182 722 SMART tpr_5 409 442 IPR019734 GO:0005515
Lele19g1182 722 Gene3D Ribonuclease Inhibitor 37 205 IPR032675 -
Lele19g1182 722 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 29 289 - -
Lele19g1182 722 FunFam Leucine-rich repeat extensin-like protein 1 40 201 - -
Lele19g1182 722 Pfam TPR repeat 416 456 - -
Lele19g1182 722 FunFam serine/threonine-protein phosphatase 5 408 522 - -
Lele19g1182 722 ProSiteProfiles TPR repeat profile. 477 510 IPR019734 GO:0005515
Lele19g1182 722 Coils Coil 449 469 - -
Lele19g1182 722 SUPERFAMILY L domain-like 40 291 - -
Lele19g1182 722 Pfam Leucine rich repeat N-terminal domain 41 74 IPR013210 -
Lele19g1182 722 ProSiteProfiles TPR repeat profile. 409 442 IPR019734 GO:0005515
Lele19g1182 722 Pfam Leucine rich repeat 110 168 IPR001611 GO:0005515
Lele19g1182 722 Pfam Leucine rich repeat 230 288 IPR001611 GO:0005515
Lele19g1182 722 SUPERFAMILY TPR-like 411 520 IPR011990 GO:0005515
Lele19g1182 722 Gene3D Ribonuclease Inhibitor 206 300 IPR032675 -
Lele19g1182 722 Gene3D Tetratricopeptide repeat domain 408 522 IPR011990 GO:0005515
Lele19g1182 722 Pfam Tetratricopeptide repeat 478 509 IPR013105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g1182 Lele-ChrLele19 7805624 7814698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g1182 21 289 Leucine-rich Repeat extension Gene Families AT3G22800 63.469 2.74e-115 353