Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g1180 ATGGCCGTAGGCAAGAACAAGCGCATCTCCAAGGGGAAGAAAGGAGGAAAGAAGAAGGCAGCTGATCCATTTGCCAAGAAGGACTGGTATGATATCAAAGCTCCTTCTGTTTTCCAAGTTAAGAGTGTGGGCAAAACCCTCGTCACGCGTACTCAGGGTACCAAGATTGCTTCAGAAGGACTGAAGCACAGAGTGTTCGAGGTCTCATTGGCTGATCTTCAAAAGGATGAGGACCACGCATACAGGAAGATTAGGTTGAGAGCTGAAGATGTTCAAGGGAAGAATGTTCTTACAAATTTCTGGGGAATGGACTTCACAACTGATAAGTTGAGGTCATTGGTTCGCAAATGGCAAACTTTGATTGAAGCTCATGTGGACGTGAAGACCACCGACAACTACACATTGAGGATGTTCTGCATTGGGTTCACTAAGAGACGTGCGAACCAGGTTAAGAGGACCTGCTATGCCCAATCAAGCCAGATCAGACAGATCCGCAGGAAGATGAGGGAGATCATGACTAACCAGGCAACTTCCTGTGATTTGAAAGAGTTGGTCCGCAAATTCATCCCCGAGATGATTGGAAAGGAGATTGAGAAGGCAACATCTAGCATCTATCCTTTGCAAAACGTGTTCATTCGCAAGGTCAAGATCTTGAAGGCTCCTAAGTTCGATCTTGGAAAACTTATGGAGGTTCATGGAGATTATTCAGAAGATGTTGGTGTGAAGGTAGACAGACCTGCAGATGAGACCATGGCCGAGGCACCCACCGAAATTGTTGGAGCTTAA 786 0.4618 MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKSVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQKDEDHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRRKMREIMTNQATSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADETMAEAPTEIVGA 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g1180 261 Pfam Ribosomal S3Ae family 16 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Lele19g1180 261 SMART Ribosomal_S3Ae_2 15 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Lele19g1180 261 MobiDBLite consensus disorder prediction 1 21 - -
Lele19g1180 261 Hamap 40S ribosomal protein S1 [RPS3A]. 1 258 IPR027500 GO:0003735|GO:0005840|GO:0006412
Lele19g1180 261 ProSitePatterns Ribosomal protein S3Ae signature. 61 73 IPR018281 GO:0003735|GO:0005840|GO:0006412
Lele19g1180 261 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 253 - -
Lele19g1180 261 MobiDBLite consensus disorder prediction 1 15 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g1180 Lele-ChrLele19 7789597 7791344 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g1180 1 261 Cytoplasmic Ribosomal Protein Gene Family AT4G34670 87.405 1.77e-166 459