Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g1179 ATGCTTAGGTGGCAGTCGGGACAAATTCAACGTCCCAGTAGCATGCGAGATACCGCAAAAGCGAAACCCCACAATTATAGAGACCGTAGAGAGAGAGTGAGAGAGAGAGAGAGAGTCAAAAGCAGAAGTGAAGAGGAATGTAGTGAGGCTACCTCTCTGGAAATGGACACACCAGAGAGGAACCAGATCGGCACTCCAATCTCCAAATTTGAGGATTCACCCGTCTTCAACTTTATCAACAGTCTTTCTCCTATAAAGCCTGTTAAGTCGGTTCATAGTATTCAGACTATCAATTCACTCACTTTTTCATCTCCTCCATCTGTGTTTACATCACCCCATGTCACCTGTCACAGGGAATCTAGATTTCTCAGGAGGCATAACGTTTTAGAAGCATCAAAGCATAAGGTTTTGTCTGAAGATGGGAAAAAAATACGTTCAAGTGAAGAAGCTCTTGCAGATTCAACTCACGCATATCACAACTCAAGTGAGCTACAAGGAAATGCTGATCAAGGGATTCCCCTGCAAGATTCAACAATTGTGCCATCTAATGAGCACTCAGACTTTCCAATTGAGCTACCGCAAACCTTAAAATATGATTGTGGTAGCCCAGCTTGTGATCCTCCATCCGGTTGTGACGAGACAAATTCTCTTCTGGATTTGTCGAGTAAGGCAGCATCGGATGTTGCCTGTGTTGATGAAGTCTGTAAAGAAAATTCATCTGAGACGGAAGTGTTACTTCCAGGAATATGTCAAATTGAGCCAATAATTGGAGCCTCAGAATGTGACTGGGATGGTTTACTTTCAGATTCTACCGATCTATTAATTTTCAACTCTCCAAATGAAAGAGAAACTTTAAAGGGTCTAATGCAGAAATCATTTGACCCCACAGGACGGTTTAGCAATTTTATGTCTCAGTTGCCACAAACTACCTTAATTGATGGTGAGAAAATGCGAATTGTTGATCCAGCTGCTTCTGATTCAGTACATGAGACTGAAGGTCATCCTTCACAGCCAGGAGAAGACATTGACAATGATCAGGCACAGGACAATCTTGCTAACACTGCTGGGATGGGTGGCAAAACTAATAGTACAATGGATAATCCGCTTGTTTCTATAACACGCCATGGCATACGGAGGCGTTGTCTAGACTTTGAGACGGTTGGAGGAAGAAGAAATAACTCCAACGATGGTTCAAATAACAGTAGTTCCGGCATATTACAGTCTGATGAGGGGAATGTTGCTAATGATAAGCAACTGCTTCCTGCAAAACGCAATGGTAATTCACAAAGGTGCGTTTTGCCTGGAATTGGCTTACACTTGAATGCTCTTGCGACCATAAAAGATTACAAAAGCTCAAGAGTTGAAAATATATCTTCTGGAAGACAAATCAGTCTGCCTAGCCCTGCCTTGCAACAATCTTCAAGCCAAGAACATAGTCTAGCATTGGTGCCTGTATCAGCAGAAGGAGATTCAGATCTGCCAGACAATGGGGTTCAGCCTGCTGAAGATTGTTCCCAGCCCTCAGGATATGTGGTTGATGAAGATTTCAACCAGAACAGCCCCAAAAAGAAAAGACGTAAGTTGGAGCCAGCTGGAGATGGAGAGTCTTGTAAGCGTTGTAATTGCAAGAAATCGAAGTGTTTGAAGCTTTATTGTGAGTGCTTTGCTGCTGGTGTCTACTGCATAGAACCTTGCTCTTGCCAGGATTGCTTCAACAAGCCTATTCATGAGGATACTGTTCTTGCAACTCGCAAGCAGATTGAGTCTCGTAATCCTCTAGCCTTTGCTCCTAAAGTCATTCGAAGCACTGATTCTGTACCTGAAATTGGGGATGATGCCAACAAAACTCCAGCTTCGGCAAGGCACAAAAGAGGATGTAACTGCAAGAAATCCAGCTGCTTGAAGAAATATTGCGAATGCTATCAGGGCGGTGTCGGTTGCTCCATTAGCTGTAGATGTGAAGGGTGCAAGAATGCGTTTGGTAGAAAGGATGGTTCCGTTCCTATTGGAATAGAAGCTGAACCAGAAGAAGAAACAGAATCATCTGAGAAGGCTGTGGCCGAAAAATCCTTACAAAAGTCTGAGATTCAGAACAACGAAGAACATCCAGAGTCTACTCTGCCGACGACACCATTACGTATTTGCAGACCGTTGCTTCCTCTATCATTTTCATCAAAGGGAAAACCTCCAAGATCTTCTTTCATTACTACTATACCGGCTTCTGGATTGTACGCGAGCCAGAAACTTGGGAAACCCAGCATCCTTCGGTCTCAACCTAAGTTTGAAAAGCAGTTTAAACCCGTTTCCAACGACGAAATGCCGGAGGTTCTCCGGGGAGACGGATCTCCTAGCATCAAGACGTCATCTCCCAACGGCAAGAGGATCTCCTCTCCTAACTGTGACTTTGGATCATCGCCGAGTCGCAGAAGTGGCAGGAAGTTGATATTACAGTCTATCCCCTCATTTCCTTCTCTCACTGCTCCTCACCTTTAG 2493 0.4404 MLRWQSGQIQRPSSMRDTAKAKPHNYRDRRERVRERERVKSRSEEECSEATSLEMDTPERNQIGTPISKFEDSPVFNFINSLSPIKPVKSVHSIQTINSLTFSSPPSVFTSPHVTCHRESRFLRRHNVLEASKHKVLSEDGKKIRSSEEALADSTHAYHNSSELQGNADQGIPLQDSTIVPSNEHSDFPIELPQTLKYDCGSPACDPPSGCDETNSLLDLSSKAASDVACVDEVCKENSSETEVLLPGICQIEPIIGASECDWDGLLSDSTDLLIFNSPNERETLKGLMQKSFDPTGRFSNFMSQLPQTTLIDGEKMRIVDPAASDSVHETEGHPSQPGEDIDNDQAQDNLANTAGMGGKTNSTMDNPLVSITRHGIRRRCLDFETVGGRRNNSNDGSNNSSSGILQSDEGNVANDKQLLPAKRNGNSQRCVLPGIGLHLNALATIKDYKSSRVENISSGRQISLPSPALQQSSSQEHSLALVPVSAEGDSDLPDNGVQPAEDCSQPSGYVVDEDFNQNSPKKKRRKLEPAGDGESCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPIHEDTVLATRKQIESRNPLAFAPKVIRSTDSVPEIGDDANKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNAFGRKDGSVPIGIEAEPEEETESSEKAVAEKSLQKSEIQNNEEHPESTLPTTPLRICRPLLPLSFSSKGKPPRSSFITTIPASGLYASQKLGKPSILRSQPKFEKQFKPVSNDEMPEVLRGDGSPSIKTSSPNGKRISSPNCDFGSSPSRRSGRKLILQSIPSFPSLTAPHL 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g1179 830 MobiDBLite consensus disorder prediction 782 824 - -
Lele19g1179 830 SMART CXC_2 535 576 IPR033467 -
Lele19g1179 830 SMART CXC_2 621 662 IPR033467 -
Lele19g1179 830 MobiDBLite consensus disorder prediction 17 49 - -
Lele19g1179 830 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 55 826 IPR044522 GO:0003700
Lele19g1179 830 MobiDBLite consensus disorder prediction 324 339 - -
Lele19g1179 830 ProSiteProfiles CRC domain profile. 536 661 IPR005172 -
Lele19g1179 830 MobiDBLite consensus disorder prediction 1 15 - -
Lele19g1179 830 MobiDBLite consensus disorder prediction 388 410 - -
Lele19g1179 830 MobiDBLite consensus disorder prediction 387 410 - -
Lele19g1179 830 MobiDBLite consensus disorder prediction 756 830 - -
Lele19g1179 830 MobiDBLite consensus disorder prediction 487 534 - -
Lele19g1179 830 MobiDBLite consensus disorder prediction 341 370 - -
Lele19g1179 830 MobiDBLite consensus disorder prediction 680 700 - -
Lele19g1179 830 MobiDBLite consensus disorder prediction 667 711 - -
Lele19g1179 830 MobiDBLite consensus disorder prediction 1 53 - -
Lele19g1179 830 MobiDBLite consensus disorder prediction 517 534 - -
Lele19g1179 830 MobiDBLite consensus disorder prediction 324 372 - -
Lele19g1179 830 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 624 659 IPR005172 -
Lele19g1179 830 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 538 573 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g1179 Lele-ChrLele19 7775300 7783396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g1179 70 829 CPP Transcription Factor Family AT4G14770 44.402 4.23e-166 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Lele19g1179 TCR 2.1e-11 No_clan