Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g1158 ATGTCTCTTGTAGCGAACGAGGATTTTCAGCACATTCTTCGTGTTCTGAACACAAATGTCGATGGTAAGCAGAGGATCATGTTCGCCCTTACCTCCATCAAAGGTATTGGTCGTCGCTTCGCCAACATCGTCTGTAAGAAAGCCGACGTCGATATGAACAAAAGGGCTGGTGAAATATCGGCTGCTGAACTTGATCATCTAATGACAATTGTGGCAAATCCACGCCAATTCAAGATTCCTGACTGGTTTCTCAACAGGAAGAAGGATTACAAGGATGGTAAATATTCCCAGGTTGTTTCCAACGCATTGGACATGAAACTCAGGGATGATCTTGAGCGTTTGAAGAAAATCAGAAACCACCGTGGTCTGCGACACTACTGGGGTCTTCGAGTCCGCGGGCAGCACACCAAGACCACAGGACGCAGGGGGAAGACCAGTCACCACAGTTTAGTTGGTACGTGCTTGCACACCTCCCAGAGGATGGCCGGAGGTAATCCTCAGAGCAAGTCCTCGCTACTGAAGCCGCCGCCACCGCAGCCGTCATCGGCCTCATCCTCTCACCGGAAATCCCGTTGGGAATCCACCAGCAACGTCAACAAAAAGTCTCCGGCATCCGATCCTAAATCCGGCGAATCTAAGAATCCCAAACCCCCCGCCGCCGCCCCATCTCCCAAAGCCAAAACGACTCCAAGTCCCGCGCATGCTAAACAGCACCCTAACGAAAAGGGGTCCGCCGCCCGAGTTCCCTCTCCCGGAGCTCCGTTTCCCTTCCCCGATCTTTCTACCTTGGGGCCGCAACCTCCGCCGGCGTACGGCTTCCACATGCTCGAGCGACATACGATTGTTCTTGCCGACGGTAGTGTCAGATCCTACTTTGCTCTTCCTCCTGATTATCCTCTTGATCCACCTGGAAGATTATTCCCACCCCCAATAGGTCCCGTGTTCGATCCCGGTCGATTTGGAACCCGATTCCCTCCTGTACTACCTCACCTTGATGATCAAGATGGAGGGCGTGGTGGGAGGCACCCGGATTACTGGGATTCGATTGGGCTTGATGGGCGTGGTAATGGACCTGTTGAAGGTTCAGCGAAGAGGAAATTTGGTGGTGATGAGGTGGAGAGGGATGACTTTGCTCGACAAAGAAAGCAACTTTTGCACGATGCTAATGTTAATCCAAACGGGTTTCCACCAACGGGTAAGTTTTCCATGGGGACTAGTGGACCTTTCAAGCATGATTTGATGGACCCTGGACGAGAGTCTGAATTGAGAGCTTCCAAATATATTAGGGTTGGTGGGGCTTATGAAAATGTAGGTTTTAGGCAACCTGGTGCTGGTGGTGCTGGTGATAACGTTGTCCTTAAACATTTGGAGGTTGATCAGGGTGCACTAAAGAAAGCGTTTCTTCACTTTGTTAAGTTAGTAAATGAAAATGCTGCACAAAGGAGGAATTACTTAGAGGACGGAAAGCAAGGGCGGATACAGTGCGTTGCTTGCGGCAGGTCTTCTAAAGATTTTCCAGATATGCATGCTCTCATTATGCACACCTACAACTCAGATAATTCTGACTTGCGTGTTGATCATTTGGGCTTACACAAAGCCTTGTGTGTTTTAATGGGTTGGAACTACTCAAAGCCACCTGATAACTCAAAGGCATATAAGTTCCTACCTGCTGATGAAGCAGCAGCAAACCGGGATGATCTGATCTTGTGGCCTCCTTTGGTGATTATCCATAACACTATTAGTGGAAGGGGAACAGATGGTCGCATGGAGGGGTTGGGAAACAAAACAATGGATAATAAAGTTAGAGAACTCGGAATTGGGGGTGGCAAATCAAAGTCATTATATGGAAGAGATGGTCATTTGGGCATATCACTGATTAAATTTGCTGGGGACCAAGCCGGTGTTCATGAAGCCATTCGGCTTGCCGAGCACTTTGAGAAGGAGAATCATGGACGCATGACGTGGGCCCTTGTGCAGCCCCTGGCATTAGGTAAGGATGATGAGAACAATCCAAATTTAGTGAAATACGATGAGAAGAAAGGAGAGAGGAGGAGGATCTTGTTTGGCTATCTGGGGACTGCTTTTGATCTTGAAAAAATTGATTTTGACACTAGGAAGAGGGTGGTGATAGAGAGCTTGAGGGATAAAGCATCATCCAGGTAG 2163 0.4882 MSLVANEDFQHILRVLNTNVDGKQRIMFALTSIKGIGRRFANIVCKKADVDMNKRAGEISAAELDHLMTIVANPRQFKIPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTSHHSLVGTCLHTSQRMAGGNPQSKSSLLKPPPPQPSSASSSHRKSRWESTSNVNKKSPASDPKSGESKNPKPPAAAPSPKAKTTPSPAHAKQHPNEKGSAARVPSPGAPFPFPDLSTLGPQPPPAYGFHMLERHTIVLADGSVRSYFALPPDYPLDPPGRLFPPPIGPVFDPGRFGTRFPPVLPHLDDQDGGRGGRHPDYWDSIGLDGRGNGPVEGSAKRKFGGDEVERDDFARQRKQLLHDANVNPNGFPPTGKFSMGTSGPFKHDLMDPGRESELRASKYIRVGGAYENVGFRQPGAGGAGDNVVLKHLEVDQGALKKAFLHFVKLVNENAAQRRNYLEDGKQGRIQCVACGRSSKDFPDMHALIMHTYNSDNSDLRVDHLGLHKALCVLMGWNYSKPPDNSKAYKFLPADEAAANRDDLILWPPLVIIHNTISGRGTDGRMEGLGNKTMDNKVRELGIGGGKSKSLYGRDGHLGISLIKFAGDQAGVHEAIRLAEHFEKENHGRMTWALVQPLALGKDDENNPNLVKYDEKKGERRRILFGYLGTAFDLEKIDFDTRKRVVIESLRDKASSR 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g1158 720 FunFam 40S ribosomal protein S18 92 143 - -
Lele19g1158 720 Pfam XS domain 565 698 IPR005380 GO:0031047
Lele19g1158 720 PANTHER RNA RECOGNITION MOTIF XS DOMAIN PROTEIN-RELATED 454 718 - -
Lele19g1158 720 SUPERFAMILY S13-like H2TH domain 13 145 IPR010979 GO:0003676
Lele19g1158 720 Gene3D 30s ribosomal protein s13, domain 2 92 142 IPR027437 -
Lele19g1158 720 Gene3D XS domain 561 719 IPR038588 -
Lele19g1158 720 MobiDBLite consensus disorder prediction 183 209 - -
Lele19g1158 720 ProSitePatterns Ribosomal protein S13 signature. 121 134 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele19g1158 720 ProSiteProfiles Ribosomal protein S13 family profile. 15 145 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele19g1158 720 MobiDBLite consensus disorder prediction 348 369 - -
Lele19g1158 720 Gene3D - 1 80 - -
Lele19g1158 720 MobiDBLite consensus disorder prediction 158 263 - -
Lele19g1158 720 FunFam 40S ribosomal protein S18 1 80 - -
Lele19g1158 720 Pfam Ribosomal protein S13/S18 14 142 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele19g1158 720 Hamap 30S ribosomal protein S13 [rpsM]. 12 152 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g1158 Lele-ChrLele19 7599016 7609096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g1158 1 145 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 95.172 1.54e-96 293