Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g1112 ATGACGGAAGGTGATAAAAAAGGGCTGGAGGGATTCACTCTGTTCGCCAAGCTGGATAGGCTCAGAGGAGACCGCTATGGCAACAACAACCGCGATTCTCACCCATATCGTCACTCCAGAGCTCCGTCCCGCTTCTCCGACGCTCCCTTTAACAACAACCGCGGTGGTGGAGCCTCTCACCACCGTCAGTTTGACAGCTCACCCCGTCGCTCTCCTGAAAGGGGTTCAGGGTTCCGATCACCGGGTTTTGGCGGCAGCGATGGGTTTAGGTCAGTGAGTGGTGAGGGTTCTGGGGGGTTTGGGTTTAACGGTCGTCAGGGACAGCCACTGTCTGGTCAGAAACGAGGGTTTCCCTTCTCTGGACGTGGAGGGTCGCCAGACCGTTTTGGTGGGGAAAGTTTTGCCAAGCTTTTTGTTGGATCTGTTCCTCGGACAGCAACTGAAGAAGATATTCGGCCTTTGTTTGAGCAACATGGGAATGTGGTTGAGGTTGCTCTGATCAAGGATAGAAAGACAGGACAGCAGCAAGGTTGTTGTTTCATAAAGTATGCTTCCCCTGATGAAGCTGATCAAGCAATTAAAGCATTGCACAATCAGCATATTCTTCCTGGAGGTGTTGGTCCAATCCAAGTGAGATATGCTGATGGTGAACGAGAACGCCTTGTTGAATACAAATTATTTGTGGGCTCTCTGAACAAACAGGCTACTGTAAAGGAAGTTGAGGAAATCTTCTCAAAATATGGATGCGTTGAAGATGTTTATCTGATGCGTGATGAGAAGAAGCAAAGCCGCGGATGTGGTTTTGTTAAATACTCTCACAGAGATATGGCCATGGCAGCTATAGATGCACTTAATGGAATTTATACAATGAGAGGGTGTGATCAACCTTTAACTGTACGATTTGCTGATCCTAAGAGACCTCGACAAGGGGATTCAAGGGGTCCTGCATTTGGTTCAAGATTTGAAGTACCCAGTCCAAGACATCCAGCATTTGGTCCAAGATTTGAAGCACCAAGTTCTAGACCTCCATTCATTGTTAATGATCCCATGGGTGATCAAGCCTCTTCTCCCAATGCTTGGCGTCCAATGCATCCTTCAAATATGGGGCCATCATCTGACACTGGTCTGCATAACCTGTGGTCTCCATTGCTTCCAAGATCTGGTGACATGGACATGACATTGGCTATGAATGCAGGCGCTCCTGGGAATGGCTTTGGAGGCCCTTCAAATGGTCCTTTTCAAAGACAGGCTCTGTCACCAATGTCGCAACAGAGTTTCAATCAAAACATTCCACATTTTCCACCTGCCAGCCAACAAATGTCGCCTCTGCAGAAGCCTATTCAATCACCTCAGGACAAGCCTTCCCTCCAGATGTACCCACCAGCCCCGATCCCCTACTCACAAACACCGCCTTCTCTTGCATCATTTAGGCAGGTTGGCCAACCGCAACTTCCTTTATCTGCTGGTCATCTTCCTTCACAACAGATGCATGGTCTAAATGGACTCTTTCCAGTTTCTCAGCCTGGAGCTCAGCAGGTTGCTTCACCTGCTGCAGCTGGCCAGGGCCATGCCCCTTTAGATACCAGCTTGCAAACAAATACAACAATGACCACTGCACATCAACAGCAACTATCTACCTCTATGCAGCAGCAGCAGCCACTTCAGCCTCAGCAGTCTCCAACCCAGTTGGCTCAAATGTTGACACAACAAACTCAGACTTTGCAAGCAAGCTTTCATTCATCTCAGAAGGCCTTCTCCCAGCTTCAACAACATATACAGATGATGCAACCATCTAGTCAAGGTTTAACATTGCAGCAAAATGCAGAATCTATGAAAAAACAGTCTCAGTGGACGGGGGCTGCACCAACTGCAGATGTGCCTTCATCCTTATCTGCTTCTGCTGTACCTCCAATAATCCAGAACATACCTCCTGCAAAATGTGATTGGACAGAGCATATATCTCCTGAGGGATTCAAGTACTATCACAATAGTGTTACCGGAGAAAGTCGGTGGGAGAAACCTGAAGAGTTGACATTATCTGAACAGCAAAAGCCATCTGTTCAGAAATCTCAAAATAAGTCACAGCCTCCAATATCACCTCAGCAAGTTCCTCAAATGCAACAATTACAACCTCAAGGCCAACTCCAAGGACAGGTTCACCAGCAACAGTACCAAGCATATGCAGCTGCAGGTCATCAAAATGTTCAGGGAATGTATGGTATGCAAGAGTGGATGTGGAAAGATAAGCCAGCAGGGATTTGA 2262 0.4757 MTEGDKKGLEGFTLFAKLDRLRGDRYGNNNRDSHPYRHSRAPSRFSDAPFNNNRGGGASHHRQFDSSPRRSPERGSGFRSPGFGGSDGFRSVSGEGSGGFGFNGRQGQPLSGQKRGFPFSGRGGSPDRFGGESFAKLFVGSVPRTATEEDIRPLFEQHGNVVEVALIKDRKTGQQQGCCFIKYASPDEADQAIKALHNQHILPGGVGPIQVRYADGERERLVEYKLFVGSLNKQATVKEVEEIFSKYGCVEDVYLMRDEKKQSRGCGFVKYSHRDMAMAAIDALNGIYTMRGCDQPLTVRFADPKRPRQGDSRGPAFGSRFEVPSPRHPAFGPRFEAPSSRPPFIVNDPMGDQASSPNAWRPMHPSNMGPSSDTGLHNLWSPLLPRSGDMDMTLAMNAGAPGNGFGGPSNGPFQRQALSPMSQQSFNQNIPHFPPASQQMSPLQKPIQSPQDKPSLQMYPPAPIPYSQTPPSLASFRQVGQPQLPLSAGHLPSQQMHGLNGLFPVSQPGAQQVASPAAAGQGHAPLDTSLQTNTTMTTAHQQQLSTSMQQQQPLQPQQSPTQLAQMLTQQTQTLQASFHSSQKAFSQLQQHIQMMQPSSQGLTLQQNAESMKKQSQWTGAAPTADVPSSLSASAVPPIIQNIPPAKCDWTEHISPEGFKYYHNSVTGESRWEKPEELTLSEQQKPSVQKSQNKSQPPISPQQVPQMQQLQPQGQLQGQVHQQQYQAYAAAGHQNVQGMYGMQEWMWKDKPAGI 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g1112 753 CDD WW 646 676 IPR001202 GO:0005515
Lele19g1112 753 SUPERFAMILY RNA-binding domain, RBD 224 324 IPR035979 GO:0003676
Lele19g1112 753 ProSiteProfiles WW/rsp5/WWP domain profile. 643 676 IPR001202 GO:0005515
Lele19g1112 753 PANTHER RNA BINDING PROTEIN 54 541 - -
Lele19g1112 753 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 137 200 IPR000504 GO:0003723
Lele19g1112 753 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 292 IPR000504 GO:0003723
Lele19g1112 753 Gene3D - 222 313 IPR012677 -
Lele19g1112 753 Gene3D - 131 221 IPR012677 -
Lele19g1112 753 PRINTS Paraneoplastic encephalomyelitis antigen family signature 229 244 IPR002343 GO:0003723|GO:1990904
Lele19g1112 753 PRINTS Paraneoplastic encephalomyelitis antigen family signature 244 256 IPR002343 GO:0003723|GO:1990904
Lele19g1112 753 PRINTS Paraneoplastic encephalomyelitis antigen family signature 135 150 IPR002343 GO:0003723|GO:1990904
Lele19g1112 753 PRINTS Paraneoplastic encephalomyelitis antigen family signature 211 228 IPR002343 GO:0003723|GO:1990904
Lele19g1112 753 PRINTS Paraneoplastic encephalomyelitis antigen family signature 285 302 IPR002343 GO:0003723|GO:1990904
Lele19g1112 753 MobiDBLite consensus disorder prediction 20 126 - -
Lele19g1112 753 MobiDBLite consensus disorder prediction 680 717 - -
Lele19g1112 753 MobiDBLite consensus disorder prediction 506 563 - -
Lele19g1112 753 MobiDBLite consensus disorder prediction 600 631 - -
Lele19g1112 753 MobiDBLite consensus disorder prediction 45 60 - -
Lele19g1112 753 SUPERFAMILY RNA-binding domain, RBD 79 214 IPR035979 GO:0003676
Lele19g1112 753 MobiDBLite consensus disorder prediction 300 328 - -
Lele19g1112 753 FunFam Flowering time control protein FCA 221 310 - -
Lele19g1112 753 Pfam WW domain 648 674 IPR001202 GO:0005515
Lele19g1112 753 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 135 216 IPR000504 GO:0003723
Lele19g1112 753 MobiDBLite consensus disorder prediction 425 475 - -
Lele19g1112 753 MobiDBLite consensus disorder prediction 20 41 - -
Lele19g1112 753 MobiDBLite consensus disorder prediction 525 563 - -
Lele19g1112 753 SUPERFAMILY WW domain 638 677 IPR036020 GO:0005515
Lele19g1112 753 MobiDBLite consensus disorder prediction 425 455 - -
Lele19g1112 753 ProSitePatterns WW/rsp5/WWP domain signature. 649 674 IPR001202 GO:0005515
Lele19g1112 753 MobiDBLite consensus disorder prediction 672 717 - -
Lele19g1112 753 SMART rrm1_1 136 212 IPR000504 GO:0003723
Lele19g1112 753 SMART rrm1_1 225 300 IPR000504 GO:0003723
Lele19g1112 753 FunFam flowering time control protein FCA isoform X2 130 220 - -
Lele19g1112 753 SMART ww_5 644 676 IPR001202 GO:0005515
Lele19g1112 753 Gene3D - 644 690 - -
Lele19g1112 753 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 304 IPR000504 GO:0003723
Lele19g1112 753 CDD RRM2_FCA 225 304 IPR034645 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g1112 Lele-ChrLele19 7225577 7237213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g1112 133 333 Eukaryotic Initiation Factors Gene Family AT1G71770 26.407 3.72e-15 77.4