Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g1092 ATGGACTGCCAGCGACTCGCGTTAGAGTCCCGTGCACAAATTGTTCGAGGAGATGACGATGAATCGGGCAGTAAAAGACGCGAGTTGTGTCGATTTGAAAGTCACGCGGAGGATATGAAGGTGGTTATTTATGAATTACATATACATGGGATCTCAAAGGTTAGGCTTGTGATTGCTGTTTACTGTTTGCATGTGAAGCTTGAGGTCTCAGATTGCTTTGTTGAACTTGATTGGAGGTTTCAAGAACTGAAGGGCTGTGACACTGTATTCTTTGTACCCAACACATGATTCAAGTTTAGATTATATGCTTTAGCTTCAATAGTTAATGCTCTGACTTCACCAATATCTGATTCTTTGTATGTAAGCTTGTTATGATTCATAGAGCTCACAAAGATGTTTTTCATAATTTGGTTTGTGGAAAGCACAATGAAGCCATTTCTGTCATTGAGTCATACTGATACTGACGTCAATTGTTCACACCTTGATTCTAATCACTCAATGGCTCGAGTTCCTTATCCATATGGTGATCCTTTTTATGGTGGCTCTGTAGTATCATATGGATCTCAGGCTATTAATCAACCCCAAATGGTTCCCCAAATGCTGGGACTTGCATCTACAAGAGTCGCATTGCCACTCGATCTTGCAGAAGACGGGCCCATTTATGTCAATGCAAAGCAATATCATGGAATACTGAGAAGGCGACAGTCGCGTGCAAAGCTCGAGGCTCAAAACAAAATTATCAAAAGCCGTAAGCCATATCTTCACGAGTCTCGGCATCGCCATGCTTTGAACAGGGTTAGGGGATCTGGAGGACGCTTTCTCAGCACCAGACAGCTTCAAAAGTCCAATGCACAAGTTGTGACTAGTGCCAATTCTGGTTCAGACTCTGTCAACAACTTGTATCAAAAGAAAGATACATCTTCAGAAGTGGAGATTCATCCCGCAAGGACCGGCACTGGCAAAAATGCATCTTCTATCTCGACCTGCTCTGACATGACAAGTGGGTCCAGAAACAACGTCAATTTTAGGCAGCAGCCAGAGTGCAAGTTCTTGGGGAACTCTCCAAACATGGGCAGCACATCACAGTGCAGCGGTGGACTCACCTTTGGTGGTGGGACCCAGCAACGTGCACCAGTAGTCCGGTGA 1146 0.4433 MDCQRLALESRAQIVRGDDDESGSKRRELCRFESHAEDMKVVIYELHIHGISKVRLVIAVYCLHVKLEVSDCFVELDWRFQELKGCDTVFFVPNTXFKFRLYALASIVNALTSPISDSLYVSLLXFIELTKMFFIIWFVESTMKPFLSLSHTDTDVNCSHLDSNHSMARVPYPYGDPFYGGSVVSYGSQAINQPQMVPQMLGLASTRVALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKIIKSRKPYLHESRHRHALNRVRGSGGRFLSTRQLQKSNAQVVTSANSGSDSVNNLYQKKDTSSEVEIHPARTGTGKNASSISTCSDMTSGSRNNVNFRQQPECKFLGNSPNMGSTSQCSGGLTFGGGTQQRAPVVR 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g1092 381 MobiDBLite consensus disorder prediction 359 381 - -
Lele19g1092 381 PRINTS CCAAT-binding transcription factor subunit B signature 219 241 IPR001289 GO:0003700|GO:0006355
Lele19g1092 381 PRINTS CCAAT-binding transcription factor subunit B signature 250 273 IPR001289 GO:0003700|GO:0006355
Lele19g1092 381 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 152 340 IPR001289 GO:0003700|GO:0006355
Lele19g1092 381 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 219 273 IPR001289 GO:0003700|GO:0006355
Lele19g1092 381 MobiDBLite consensus disorder prediction 318 340 - -
Lele19g1092 381 ProSitePatterns NF-YA/HAP2 subunit signature. 221 241 IPR018362 GO:0003677|GO:0016602
Lele19g1092 381 Gene3D - 216 278 - -
Lele19g1092 381 ProSiteProfiles NF-YA/HAP2 family profile. 216 276 IPR001289 GO:0003700|GO:0006355
Lele19g1092 381 MobiDBLite consensus disorder prediction 312 340 - -
Lele19g1092 381 SMART cbf3 215 276 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g1092 Lele-ChrLele19 7092906 7097924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g1092 109 282 CCAAT-HAP2 Transcription Factor Family AT1G17590 46.629 3.94e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lele19g1092 CBFB_NFYA 1.1e-26 No_clan