Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g1086 ATGCATGGTGTTATTGATAGTTATGAATATGAGGGCAAAACTTTAGGGATAAGTCAGGCAGCATTGCCTAGACCCTTTGCTGTTGCTTCATGTGCAATGGTTCTCAAGAAAAGAGTGTTGCAATTTTCAACATTGGTTCTAACAGCATGGCGTTCTGGTTTCAGTCGTTTTGGTAAATTTGTTGAGATCCAATTCGACCACAAGGGAAGAATCTCAGGGGCAGCCATACGTACATACTTGCTTGAGAGGTCTCGTGTTTGCCAAATTTCAGATCCTGAAAGAAATTACCATTGCTTTTACCTTCTTTGTGCTGCACCAGCTGAGAAACCTGGAGGAATAATAGCACTCCTTGATGAAGCCTGCTCTGATGACAAAGTCGCATGCCAAATTATCCTTGATAAAATGGGTTTGAAAGGATACCAGATAGGCAAGACAAAGGTTTTCCTAAGAGCTGGTCAGATGGCTGAGTTGGATGCAAGAAGAGCCGTGGTGCTAGGAAATGCTGCAAGAACTGTCCAAAGACAAATACGCACATACATTGCACGCAAGGAGTTCATTGAATTGAGGCAAGCAGCAATTTATCTGCAATCTAACTTGCGAGGCATATTGGCGCGGAAGCTGTATGAGCAGTTGCGACGGGAAGCAGCAGCTGTGAAGATAGAGAAGAACTTCAGAGGACACATTGCAAGGAAATCATACCTAACCGCACGATCATCTGCAATCACATTACAGACAGGATTAAGGGCTATGAAGGCTCGTGATGAATTTAGATTTAGAAAGCAAACAAAGGCTGCAATTCTCTTACAGGCTCGCGTGCGTCAACATATTGCATATTCTTATTATAGAAGATTGCAGAAGGCTGCAATTGTTACTCAATGTGGTTGGAGGCGAAGGGTTGCTAGGAGGGAACTCAGAAAACTTAAAATGGCTGCAAGAGAAACAGGGGCTCTTCAAGAAGCAAAGAACAAACTAGAAAAGCGTGTTGAAGAACTTACATGGCGTTTGCAAATTGAAAAGCGTTTGAGAACTGACTTGGAAGAGGAGAAAGCACAAGAAATTTCCAAGTTAAAGAATGCTTTGCATATAATGCAAATACAAGTAGAAGAAGCAAATGCCAAAGTCCTCAAAGAACGTGAGGCTGCTCGGAAAGCAATTGAAGAAGCACCCCCAGTTATCAAGGAGACTCCTGTTATAATTCAGGATACCGAAAAGCTTAATTCCGTAATGGCTGAGGTCATTAGTTTGAAGGAGTCACTGATGACAGAAAGAGAGGCTAAAGGAGAGACCAAGAGAGCTCATGCAGATGCTGAGGCTAGAAATGCAGAGCTGGTTAAGAAAGTAGAAGATTCTAGTCGCAAAGTGGATCAACTTCAAGAATTGGTTCAAAGATTGGAAGAAAAAGTATCCAATTCAGAGTCAGAAAACCAAGTTCTTCGCCAGCAAGCATTGGCTGTATCACCAACTGGAAAAGCTCTATCTGGAAGAACAAGGACTGTGATTATACAGAGGACACCCGAAAATGGAAATGCTTTAAATGGAGAATCAAAACCTGCAACGGACATGACTCTTGCTGTATCCAATGTACGTGAACCTGAATCTGAGGGAAAGCCACAAAAATCTCTCAATGAGAAACAGCAAGCGCAGGATAATGCTGATGTATTAGCCTACTGGTTGTCTAATACATCAACTTTGTTGTTGCTTCTCCAACGAACTCTCAAAGCAAGTGGGGCAGCCAGCTTAACACCACAAAGGCGGAGAACAGCCTCAGCTTCGCTGTTTGGAAGAATGTCTCAAGGGCTAAGGGCATCTCCTCAAACTGCTGGTTTACCATTTCTAAATGTCACATGTGGGTTCAAAGTATTTGACAAGCACAGTTCTGAGTTCATTTATCTGTTTAAGGTTCATTTTCATTTTGACAAAACAAATGCAGGCTCCGAGGACTTCACGGCAAGTCTTCTGTTGCGTCGTGAGTGTTGTTCATTCAGTAATGGGGAGTACGTAAAGACAGGTTTGGCTGAATTAGAACAGTGGTGCAATGAAGCAACAGAGGAGTATGTTGGTTCAGCTTGGGAGGAACTGAAGCATATCAGGCAGGCTGTTGGGTTCCTGGTGATACATCAAAAACCCAAGAAGACCTTGAATGAAATAATAAAGGAACTTTGCCCTGTTCTTAGCATACAACAATTATACAGGATCAGTACAATGTACTGGGATGATAAATATGGCACGCACAGTGTGTCTACAGATGTTATCGCGAAAATGAGAGTCATGATGTCTGAAGACTCTGGCAATGCTGTCAGCAGCTCATTCCTACTGGACGATGACTCAAGTATTCCATTCTCAGTAGATGACATCTCTAAATCCTTGCAACAAGTTGATGTATCTGATGTGGATCCTCCTCCATTAATCCGTGAGAACTCAGGATTTGGGTTCCTTCTAGCACGGTCAGAGTGA 2454 0.4275 MHGVIDSYEYEGKTLGISQAALPRPFAVASCAMVLKKRVLQFSTLVLTAWRSGFSRFGKFVEIQFDHKGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPAEKPGGIIALLDEACSDDKVACQIILDKMGLKGYQIGKTKVFLRAGQMAELDARRAVVLGNAARTVQRQIRTYIARKEFIELRQAAIYLQSNLRGILARKLYEQLRREAAAVKIEKNFRGHIARKSYLTARSSAITLQTGLRAMKARDEFRFRKQTKAAILLQARVRQHIAYSYYRRLQKAAIVTQCGWRRRVARRELRKLKMAARETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEEKAQEISKLKNALHIMQIQVEEANAKVLKEREAARKAIEEAPPVIKETPVIIQDTEKLNSVMAEVISLKESLMTEREAKGETKRAHADAEARNAELVKKVEDSSRKVDQLQELVQRLEEKVSNSESENQVLRQQALAVSPTGKALSGRTRTVIIQRTPENGNALNGESKPATDMTLAVSNVREPESEGKPQKSLNEKQQAQDNADVLAYWLSNTSTLLLLLQRTLKASGAASLTPQRRRTASASLFGRMSQGLRASPQTAGLPFLNVTCGFKVFDKHSSEFIYLFKVHFHFDKTNAGSEDFTASLLLRRECCSFSNGEYVKTGLAELEQWCNEATEEYVGSAWEELKHIRQAVGFLVIHQKPKKTLNEIIKELCPVLSIQQLYRISTMYWDDKYGTHSVSTDVIAKMRVMMSEDSGNAVSSSFLLDDDSSIPFSVDDISKSLQQVDVSDVDPPPLIRENSGFGFLLARSE 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g1086 817 Pfam IQ calmodulin-binding motif 237 257 IPR000048 GO:0005515
Lele19g1086 817 Pfam IQ calmodulin-binding motif 168 185 IPR000048 GO:0005515
Lele19g1086 817 Pfam IQ calmodulin-binding motif 189 208 IPR000048 GO:0005515
Lele19g1086 817 Pfam IQ calmodulin-binding motif 286 305 IPR000048 GO:0005515
Lele19g1086 817 Pfam DIL domain 651 739 IPR002710 -
Lele19g1086 817 ProSiteProfiles IQ motif profile. 167 191 IPR000048 GO:0005515
Lele19g1086 817 SMART iq_5 235 257 IPR000048 GO:0005515
Lele19g1086 817 SMART iq_5 260 282 IPR000048 GO:0005515
Lele19g1086 817 SMART iq_5 212 234 IPR000048 GO:0005515
Lele19g1086 817 SMART iq_5 283 305 IPR000048 GO:0005515
Lele19g1086 817 SMART iq_5 164 186 IPR000048 GO:0005515
Lele19g1086 817 SMART iq_5 187 209 IPR000048 GO:0005515
Lele19g1086 817 Coils Coil 307 348 - -
Lele19g1086 817 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 215 IPR027417 -
Lele19g1086 817 ProSiteProfiles Myosin motor domain profile. 1 104 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lele19g1086 817 ProSiteProfiles IQ motif profile. 261 287 IPR000048 GO:0005515
Lele19g1086 817 Coils Coil 353 387 - -
Lele19g1086 817 Coils Coil 433 481 - -
Lele19g1086 817 FunFam unconventional myosin-Va 264 311 - -
Lele19g1086 817 SMART MYSc_2a 3 680 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lele19g1086 817 ProSiteProfiles Dilute domain profile. 458 760 IPR002710 -
Lele19g1086 817 ProSiteProfiles IQ motif profile. 236 265 IPR000048 GO:0005515
Lele19g1086 817 Gene3D - 118 209 - -
Lele19g1086 817 SMART DIL_2 630 742 IPR002710 -
Lele19g1086 817 ProSiteProfiles IQ motif profile. 188 217 IPR000048 GO:0005515
Lele19g1086 817 PANTHER MYOSIN 55 108 - -
Lele19g1086 817 ProSiteProfiles IQ motif profile. 213 242 IPR000048 GO:0005515
Lele19g1086 817 Gene3D - 263 312 - -
Lele19g1086 817 Gene3D - 212 262 - -
Lele19g1086 817 Pfam Myosin head (motor domain) 55 105 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lele19g1086 817 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 313 IPR027417 -
Lele19g1086 817 Gene3D Kinesin motor domain 48 117 IPR036961 -
Lele19g1086 817 FunFam unconventional myosin-Va 216 263 - -
Lele19g1086 817 FunFam unconventional myosin-Va 167 215 - -
Lele19g1086 817 ProSiteProfiles IQ motif profile. 284 313 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g1086 Lele-ChrLele19 7051225 7064424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g1086 651 817 Myosins gene family AT5G20490 86.826 3.48e-95 324