LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele19g1081	ATGAATAAAGGAAGCTTAGGTCCAAATCTCAAACTCACTGTTCCTGTTCCTGTTTCTGATCAAGTTTCTTTCGCCAAGTTCCTTACTGAGAGCGGGACCTTCAAGGAGGGGGATCTTCTCGTCAACAAGTATGGAGTTCGAATTATCTCTCAGAATGAAGTTGAAGCTCCACCCCCTATCAGGCCACTAGACAACCAGTTAAGTTTAGCAGACATAGACGCAATCAAAGTGGTCGGAAAGGGAAGCGGCGGTATAGTGCAATTGGTGCAGCACAAATGGACTAATCAGTTTTTTGCATTAAAGGTAATTCAAATGAATATTGACGAGTCTATGCGCAAGCAGATAGCACAAGAGCTGAAAATTAATCAATCAGCTCAATGTCCCTATGTTGTAATCTGTTACCAGTCCTTCTATATAAATGGCGTTATATCCATCGTCTTAGAGTACATGGATGGAGGGTCTCTGGAAGATTTTCTGAAGAAAGTGAAATCAATTCCAGAGGCATATCTTGCTGCCATTTGCAAGCAGGTGCTGAAGGGTTTAACATATCTTCACCATGAAAAGCATATTATTCACAGGGACTTAAAGCCTTCCAATTTGTTGATTAATCACAGAGGGGAAGTAAAGATCACTGACTTTGGCGTTAGTGCAATCATGGAAAGTACATCTGGTCAAGCTAACACTTTCATTGGAACACGTATCTATATGTCTCCCGAGAGAATCTATGGATTCCAGAGTGGCTACAACTACAAATGTGACATATGGAGTTTGGGACTAATATTGCTTGAGTGTGCTACGGGGAGGTTTCCATATACGCCACCCGATCAAGGAGAAAGATGGGAAAATGTTTTTCAGCTTATTGAAGCTGTTGTTGAAGCTCCTCCTCCCTCTGCCCCACCTGATCAATTTTCTCCAGAGTTCTGCTCATTTATATCAGCATGTTTGCAGAAAAATCCAAAGGATAGATTGTCAGCTCAAGAACTTATGAGACATCCATTTATCAGTATGTACGAGGACTTGGATGTGGATCTTTCAGCTTACTTCTCCAACGCAGGATCTCCACTTGCTACTTTATAA	1077	0.416	MNKGSLGPNLKLTVPVPVSDQVSFAKFLTESGTFKEGDLLVNKYGVRIISQNEVEAPPPIRPLDNQLSLADIDAIKVVGKGSGGIVQLVQHKWTNQFFALKVIQMNIDESMRKQIAQELKINQSAQCPYVVICYQSFYINGVISIVLEYMDGGSLEDFLKKVKSIPEAYLAAICKQVLKGLTYLHHEKHIIHRDLKPSNLLINHRGEVKITDFGVSAIMESTSGQANTFIGTRIYMSPERIYGFQSGYNYKCDIWSLGLILLECATGRFPYTPPDQGERWENVFQLIEAVVEAPPPSAPPDQFSPEFCSFISACLQKNPKDRLSAQELMRHPFISMYEDLDVDLSAYFSNAGSPLATL	358

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele19g1081	358	PANTHER	DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED	65	350	-	-
	Lele19g1081	358	SMART	serkin_6	72	334	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele19g1081	358	Gene3D	Transferase(Phosphotransferase) domain 1	152	354	-	-
	Lele19g1081	358	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	190	202	IPR008271	GO:0004672\|GO:0006468
	Lele19g1081	358	Pfam	Protein kinase domain	75	334	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele19g1081	358	ProSiteProfiles	Protein kinase domain profile.	72	334	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele19g1081	358	ProSitePatterns	Protein kinases ATP-binding region signature.	78	101	IPR017441	GO:0005524
	Lele19g1081	358	FunFam	Mitogen-activated protein kinase kinase 6	42	151	-	-
	Lele19g1081	358	SUPERFAMILY	Protein kinase-like (PK-like)	70	340	IPR011009	-
	Lele19g1081	358	Gene3D	Phosphorylase Kinase; domain 1	51	151	-	-
	Lele19g1081	358	CDD	PKc_MAPKK_plant_like	70	338	-	-
	Lele19g1081	358	FunFam	Mitogen-activated protein kinase kinase 6	153	353	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele19g1081	Lele-ChrLele19	7006030	7008974	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele19g1081	29	357	MAP Kinase Kinase Gene Family	AT4G26070	66.867	2.94e-168	471

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE7	Lele19g1081		Pkinase	9.2e-70	CL0016