LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele19g1057	ATGGGAGAGAAAGGGTTAAGGTGCGGATGTTTAGTGTTGTGGCTCACTCTGCTTATAAGGGACCGAGTTCTGAGTTCTGAACTTGGCAACAAAATATGTACGTCACGTTGCGGCATTATTCCAAACATCTCATATCCATTCCGACTACCACATGATCCACCCCACTGCGGCGACCCCGACTACGAGGTAGCCTGTGAAAACAACGTCCCTCTCCTTCATTTACAATATTATTATGATGACGATTATTATGATTTGAAGAATGGAACATACCGGGAAGTGGGAACATACAGGGTGCTGGGAATAAACTACAACAACTTCACAATCAGAATCGTAGATGAAGGCATTCAGAAGGGCAATTGCTCCTCCCTCCCTCTCCATTCCTTATCCCTTTCCACTTTCAACTATTATATCAGGAGTCCCTACAGCACTAGTACTCAAAACAGTGACGACACAGAATCTATATTAAACAAGCAGGTGGGGTACCTGAAGTGCAGCGATACAGTGAGGGACGACTCAGCGTATGTGGATACAGCTCCCTGTGTGAAAGGAGGAGGCCATCTTTATGCTGTGGCTGGAGACTTGCAGGCTCACCAGTTTCAACCTCAGTGTCTTCTGAAACGGGTGACCCTCATAGACCGAGAATGGAAATCAGTGGTGCCTGGGGGAAGAATCAAGTCCTACGCTGATATTCACAAACTCCTTTCCAATGGATTTGAGCTTTCATGGTTGCCACGAGCATGTGCTGATCGTAATTGTTCAGTTGACACTTATTGCGCTTTAAGCGTTGAAACTGAGAGGTTGCAATGCGTGCCTTATTTCAATAGCGGTAAGCATCGTATTATTGCTATTTCAATCAGATTATTGGATCCTACCGATGGAATGCTGTCCATGTTGCGCCAAGTTGGTGAAGATTATATCTACGGGATCTTAGGAGGTCTCTTCAAAATAGCGGGGAAGGTGGACTCAGAGGGATACAGAATCGGTAGCCGTTTTAGCAGATCAAATGTTGCAATGCCATTAGGAGTAATCACTGGAAGATTTGTTTTGCCATTCATCACTGTCAGATTTTTATTTGGCATCACATTCCTGTCTTCATTGTTGATTTATACATTCCGCAGAAGGCACTTGTCAATGTATGAAAACATTGAAGATTTCATAAGACTTCACAACCTCCTTCCATTAAGGTACTCCTACAAGGATTTGAAGACTATGACCAATGGTTTCAAGAACAAGTTAGGTAAAGGAGGCTTCGGCACCGTTTACCAAGGCAAGCTTAAGAGTGGAACTGATGTTGCTGTCAAAATGTTGGGCAATCCCAAAGCTAATGGCCAGGAATTCATCAGTGAAGTGGCCACTATTGGGAGGATTCACCATTTCAATGTGGTTCACCTTGTTGGATTCTGTGTGGAAGGAACAAAGCGTGCACTTGTCTATGAATTCATGCCCAATGGCTCTTTGGACACATATATCTTTTCTAAACAAAAAAATATCTCCTTGAGTTATCGCAAAATATATGAGATATCTTTAGGAGTGGCTCGTGGTATTGCTTATCTTCATCATGGGTGTGACATGCAAATATTGCATTTTGATATCAAGCCTCATAACATTCTACTTGATGACAACTTCACTCCAAAAATTTCAGATTTTGGATTGGCAAAATTATATTCCGTCGATAATAGTATTGTTACTTTGACTGCCGCAAGGGGAACAATAGGGTATATGGCTCCTGAATTGTACTATAAAAATATTGGAGGAGTGTCTCATAAGGCTGATGTTTATAGCTTTGGAATGCTTTTGATGGAGATGACAAGTCGAAGAAAGAATTTGAATCCACATGCAGAACATTCAAGCCAAATTTATTTCCCCTCATGGATTTATGGCCAGTTTGATGAAGATAAACAGATAGAAATGGAAGATTTGTCAAAAGAGGAGAAAGATTTAGCGAGAAAAATGTTCATAGTAGCACTTTGGTGTATACAGTTAAAGCCTAGTGATCGACCTTCAATGAATGAAGTCATAGAATTGTTAGAAGCAAATGATGTTGAAAGTATGGAGATGCCTCCAAAGCCTTCCATATATCCTAATGAAACACATTTAGTGGATGATGAATCCAGCTCTTACCAAACAACATCCACTGTCTCTACGAATTCTCATAATAGTCTAGGTGAGGGCACAAGTGATGGGAAACACTAA	2193	0.414	MGEKGLRCGCLVLWLTLLIRDRVLSSELGNKICTSRCGIIPNISYPFRLPHDPPHCGDPDYEVACENNVPLLHLQYYYDDDYYDLKNGTYREVGTYRVLGINYNNFTIRIVDEGIQKGNCSSLPLHSLSLSTFNYYIRSPYSTSTQNSDDTESILNKQVGYLKCSDTVRDDSAYVDTAPCVKGGGHLYAVAGDLQAHQFQPQCLLKRVTLIDREWKSVVPGGRIKSYADIHKLLSNGFELSWLPRACADRNCSVDTYCALSVETERLQCVPYFNSGKHRIIAISIRLLDPTDGMLSMLRQVGEDYIYGILGGLFKIAGKVDSEGYRIGSRFSRSNVAMPLGVITGRFVLPFITVRFLFGITFLSSLLIYTFRRRHLSMYENIEDFIRLHNLLPLRYSYKDLKTMTNGFKNKLGKGGFGTVYQGKLKSGTDVAVKMLGNPKANGQEFISEVATIGRIHHFNVVHLVGFCVEGTKRALVYEFMPNGSLDTYIFSKQKNISLSYRKIYEISLGVARGIAYLHHGCDMQILHFDIKPHNILLDDNFTPKISDFGLAKLYSVDNSIVTLTAARGTIGYMAPELYYKNIGGVSHKADVYSFGMLLMEMTSRRKNLNPHAEHSSQIYFPSWIYGQFDEDKQIEMEDLSKEEKDLARKMFIVALWCIQLKPSDRPSMNEVIELLEANDVESMEMPPKPSIYPNETHLVDDESSSYQTTSTVSTNSHNSLGEGTSDGKH	730

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele19g1057	730	MobiDBLite	consensus disorder prediction	698	723	-	-
	Lele19g1057	730	SUPERFAMILY	Protein kinase-like (PK-like)	390	677	IPR011009	-
	Lele19g1057	730	MobiDBLite	consensus disorder prediction	684	730	-	-
	Lele19g1057	730	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	379	700	IPR045874	GO:0004672
	Lele19g1057	730	Pfam	Protein tyrosine and serine/threonine kinase	408	676	IPR001245	GO:0004672\|GO:0006468
	Lele19g1057	730	Pfam	Wall-associated receptor kinase galacturonan-binding	33	112	IPR025287	GO:0030247
	Lele19g1057	730	SMART	serkin_6	406	676	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele19g1057	730	FunFam	PR5-like receptor kinase	481	688	-	-
	Lele19g1057	730	Gene3D	Phosphorylase Kinase; domain 1	382	480	-	-
	Lele19g1057	730	ProSiteProfiles	Protein kinase domain profile.	406	692	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele19g1057	730	ProSitePatterns	Protein kinases ATP-binding region signature.	412	434	IPR017441	GO:0005524
	Lele19g1057	730	FunFam	serine/threonine-protein kinase PBS1-like	376	480	-	-
	Lele19g1057	730	Gene3D	Transferase(Phosphotransferase) domain 1	481	688	-	-
	Lele19g1057	730	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	526	538	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele19g1057	Lele-ChrLele19	6828647	6831977	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele19g1057	380	717	Receptor kinase-like Gene Family	AT4G18250	47.701	1.90e-105	335

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Lele19g1057		PK_Tyr_Ser-Thr	9e-48	CL0016