Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g1054 ATGTCACTCTTTTGTCCTCCTTTTTCTTCGATCAACTTGCTACTTTCATCTTCAAAAGTCATGGCGGGAACAACACCTGAGGGTTCACAGTTTGATGCTCGTCAATTTGATGCCAAGATGAGTGAATTACTTACAGCTGATGGACAGGATTTCTTTGCCTCTTATGATGAGGTCTATGATAGTTTTGATGCTATGGGCTTGCAGGAGAATCTCCTGAGAGGCATTTATGCATACGGTTTTGAAAAGCCGTCGGCCATTCAGCAAAGGGGAATTGTTCCCTTCTGTAAGGGACTTGATGTGATTCAACAAGCTCAGTCTGGAACTGGCAAGACAGCAACGTTTTGCTCTGGAATTTTGCAGCAACTTGACTATGGTTTGATGGAATGCCAGGCTTTGGTCCTAGCACCAACTAGAGAGCTTGCACAGCAAATTGAGAAGGTTATGCGAGCCTTGGGAGATTATCTCGGCGTAAAGGTGCATGCATGTGTGGGAGGAACCAGTGTCCGTGAAGACCAACGCATTCTCTCTAGTGGTGTTCATGTTGTTGTTGGTACCCCTGGCCGTGTATTTGATATGCTTCGCAGGCAGTCACTTCGGCCAGATTACATCAAGATGTTTGTATTGGATGAGGCTGATGAGATGCTCTCCAGAGGTTTCAAAGATCAGATTTACGATATATTCCAGTTGCTGCCAAGTAAAATTCAAGTGGGAGTTTTCTCTGCCACGATGCCTCCTGAGGCCCTGGAGATCACAAGGAAATTTATGAACAAACCTGTTAGGATCCTTGTGAAGCGTGATGAGCTCACCTTGGAGGGTATAAAGCAGTTTCATGTCAATGTAGAAAGAGAGGAATGGAAGCTGGACACACTCTGTGATCTTTATGAAACGTTAGCTATCACTCAGAGTGTAATTTTTGTAAACACCCGAAGGAAGGTTGATTGGCTTACTGACAAGATGCGAAGCCGGGACCACACAGTGTCAGCAACCCATGGAGACATGGACCAGAATACTAGAGACATTATAATGCGTGAATTCCGTTCTGGTTCTTCTCGTGTTCTGATTACAACAGATCTCTTAGCACGTGGTATTGATGTCCAGCAAGTGTCTTTAGTTATTAACTATGATCTCCCAACACAACCTGAGAACTATCTTCATCGTATCGGTCGTAGTGGTAGGTTTGGGAGAAAGGGTGTTGCCATCAACTTCGTGACAAAGGATGATGAAAGAATGCTGTTTGACATCCAGAGGTTTTATAATGTGGTAATAGAGGAGCTGCCATCAAATGTTGCTGAACTCCTCTAA 1302 0.4432 MSLFCPPFSSINLLLSSSKVMAGTTPEGSQFDARQFDAKMSELLTADGQDFFASYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLMECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEREEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQRFYNVVIEELPSNVAELL 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g1054 433 Pfam Helicase conserved C-terminal domain 286 394 IPR001650 -
Lele19g1054 433 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 272 433 IPR001650 -
Lele19g1054 433 SMART ultradead3 79 276 IPR014001 -
Lele19g1054 433 FunFam Eukaryotic initiation factor 4A-II 48 267 - -
Lele19g1054 433 PANTHER RNA HELICASE 47 417 - -
Lele19g1054 433 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 207 215 IPR000629 -
Lele19g1054 433 Pfam DEAD/DEAH box helicase 85 246 IPR011545 GO:0003676|GO:0005524
Lele19g1054 433 Gene3D - 268 433 IPR027417 -
Lele19g1054 433 Gene3D - 50 267 IPR027417 -
Lele19g1054 433 CDD SF2_C_DEAD 273 403 - -
Lele19g1054 433 SMART helicmild6 313 394 IPR001650 -
Lele19g1054 433 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 60 88 IPR014014 GO:0003724
Lele19g1054 433 CDD DEADc_EIF4A 64 262 - -
Lele19g1054 433 FunFam Eukaryotic initiation factor 4A-III 268 433 - -
Lele19g1054 433 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 91 261 IPR014001 -
Lele19g1054 433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 414 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g1054 Lele-ChrLele19 6814222 6818116 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g1054 21 433 Eukaryotic Initiation Factors Gene Family AT1G72730 87.923 0.0 760