Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele19g1044 | ATGCCTAATATTATAGATCTTAATATTGTTGAAGATCAAAGCCATGAGCTCATTTTTAGCCCAACCCACCATAACCAACCTTCTTCTTCTTCTTCCTCTTCTCTATCATCATGCCCTATTCTCTTTAACCCCTCTCATCATCATCAGCAGGATCACGCTCATGGATCTTCCTTCTGGGACTCCAAGAACTTGCAAAATCATGATTATGATGAGGCTGGTGGGAAGAATATTATTGGTTCGAGTGGTGGGTCATGGAGTGATCCAGAAGAAAAGGATGGTGGTGGTGTTGAGGTCATCAGAAAGAGGGGACTGAAACTGAAAGTTTGGAAGAGATCATTAGAGAGGGATGATCAGGATGATGAAGAAAATCACCATCAAACTGAGGATATTAATTATGATTCAATGAAGTGGATGCCTTCTAAGATGAGAATGATGAGGAAGATGATGGCTTCAGATCATAATAATAATAGGGCTTCTCCTTCTTCTTCTGATATCAATAATCAGAATCAGAATCAAGAAAGAGCATTATTATTATTGTCTCCTCGGGGAACTGAACATAATAGTACCAGCAGCAACAATTCATCAACCCACAGTAACAGTAATATCACTGTTAGGGTTTGTGCTGATTGCCACACCACCAAGACCCCTCTTTGGAGAAGTGGACCTAGAGGTCCTAAGTCACTATGCAACGCTTGTGGAATTCGACAAAGGAAAGCGAGGCGAGCCATGGCGGCTGCTGCTGCTGCAAATGGGTCGCCGCCGGCTGAGAAATCTGCAGTGAAAGGGACTTACAATGTTCATCACAGCAAAAAGAAGAAGTTGAAATTAGAGTGTGAGACGACTCATCATCAGATGAAGAAGAAGCACAAGCTTGAAGATCATCATCATCATCATCATCATCAAGAAGCCAAGGCATCAGCTAATAATAATAACAATAATTCAAGAGGGAGATCATCATCATCATCAATAATAACCAAGTTTAGTTTTGAGGATTTCACAGTAAGCTTGATGAGTAAGAACTTGGCAACATCATCACAAATTTTCCCTCAGGATGAGAAGGAAGCTGCAATTCTTCTTATGGCTTTATCTTGCAATGGCCTTGTTCATGGATGA | 1113 | 0.4097 | MPNIIDLNIVEDQSHELIFSPTHHNQPSSSSSSSLSSCPILFNPSHHHQQDHAHGSSFWDSKNLQNHDYDEAGGKNIIGSSGGSWSDPEEKDGGGVEVIRKRGLKLKVWKRSLERDDQDDEENHHQTEDINYDSMKWMPSKMRMMRKMMASDHNNNRASPSSSDINNQNQNQERALLLLSPRGTEHNSTSSNNSSTHSNSNITVRVCADCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAAANGSPPAEKSAVKGTYNVHHSKKKKLKLECETTHHQMKKKHKLEDHHHHHHHQEAKASANNNNNNSRGRSSSSSIITKFSFEDFTVSLMSKNLATSSQIFPQDEKEAAILLMALSCNGLVHG | 370 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele19g1044 | 370 | MobiDBLite | consensus disorder prediction | 20 | 44 | - | - | |
| Lele19g1044 | 370 | Gene3D | - | 205 | 243 | IPR013088 | GO:0006355|GO:0008270 | |
| Lele19g1044 | 370 | MobiDBLite | consensus disorder prediction | 285 | 320 | - | - | |
| Lele19g1044 | 370 | MobiDBLite | consensus disorder prediction | 20 | 97 | - | - | |
| Lele19g1044 | 370 | CDD | ZnF_GATA | 206 | 234 | IPR000679 | GO:0006355|GO:0043565 | |
| Lele19g1044 | 370 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 203 | 241 | - | - | |
| Lele19g1044 | 370 | MobiDBLite | consensus disorder prediction | 305 | 320 | - | - | |
| Lele19g1044 | 370 | ProSiteProfiles | GATA-type zinc finger domain profile. | 205 | 237 | IPR000679 | GO:0006355|GO:0043565 | |
| Lele19g1044 | 370 | ProSitePatterns | GATA-type zinc finger domain. | 207 | 232 | IPR000679 | GO:0006355|GO:0043565 | |
| Lele19g1044 | 370 | Pfam | GATA zinc finger | 207 | 240 | IPR000679 | GO:0006355|GO:0043565 | |
| Lele19g1044 | 370 | MobiDBLite | consensus disorder prediction | 248 | 268 | - | - | |
| Lele19g1044 | 370 | MobiDBLite | consensus disorder prediction | 287 | 302 | - | - | |
| Lele19g1044 | 370 | SMART | GATA_3 | 201 | 252 | IPR000679 | GO:0006355|GO:0043565 | |
| Lele19g1044 | 370 | PANTHER | GATA TRANSCRIPTION FACTOR 22-RELATED | 12 | 369 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele19g1044 | Lele-ChrLele19 | 6746533 | 6748035 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele19g1044 | 97 | 370 | C2C2-Gata Transcription Factor Family | AT4G26150 | 35.816 | 1.34e-32 | 123 |
Transcription factors information