Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g1038 ATGGCTCCGAGAATCCTACTATGCGGCGACGTCTTGGGCCGCCTGAACCAGCTCTTCAAGCGTGTCTCATCTGTCAATAAATCAGCTGGTCCATTCGATGCGCTTTTCTGCGTGGGTCAATTCTTCCCGGAATCTCCGGACCAGCTGGACGAATTCATGCACTACATTGAGGGTCGAACGAATTTTCCCCTTCCTACTTACTTCATCGGCGACTATGGCGTCGGTGCGCCTAAAGTTTTATTATCAGCTTCTAAGGACCCGGCGAATCGTGGCTTCAAAATGGACGGCTTGAGAGTTTGCGATAATTTGTATTGGTTGAAAGGCAGTGGCAAATTCACCCTCTTGGGGTTATCTGTGGCATATTTATCGGGCAGACAAGCATCTGAGGCTCAACAGTTTGGAGTTTACAGTCAAGATGATGTTGATGCGTTGAGAGCAATAGCTGAGGAACCCGGAATAATCGACTTTGGGGTTACAAATAGAGCAAATGTTTCAGACATTCCTGCTGGACTTTCAGATTCCATGGGGAGTGATTCAATCATAGCAGAGTTGGTGGGAGAGATTAAACCACGTTATCACATTGCAGGCAGTAAAGGTATATACTATGCCCGTGAACCTTATTCTAATATTGAAGCAGTGCATGTGACTCGATTCTTAGGGCTTGCTACTGTTGGAAATAAAGATAAGCAGAAATTTATTCATGCAATTTCTCCCACGCCTGCATCCGCCATGTCCTCAACTGAGATTGCCATGAAAACCACTAATACCACCTTATCGCCATATACATTTGTGGAGAAAGGAACTTCTCCAAAGGACACTGCAAAGAGATCCAGTGATAGTGTCTCTGATTCTCAATATTGGAGATATGATGTTTCCCAAAAGCGACAGAAACATGGAACTGGAGGTGGTGATAAATTGTGTTTTAAATTTTTGTCTTCTGGTTCTTGTCCAAGGGGAGAAAAATGCAATTTTCGACACGATTTAGATGCAAGGGAACATTATACTAGAGGTGTTTGTTTTGATTTTTTGAACAAAGGGATATGTGAAAGGGGTCCAGATTGCAACTTTAAGCACAGCTTGCAGGATGAAGGGGAGAATTATGCTGACAAGAGGCCAAGATCTCAAAACTCTAGCTCTAACAGATCAAAAGAGTGCTGGTTTTGCTTGTCAAGCCCCAATGTGGAGTCACACTTGATCACTAGCATTGGAGAAAATTACTATTGTGCGTTGGCTAAAGGTCCACTTGTTGAAGACCATGTTCTGCTAATACCAGTTGAGCATTTGGCAAGTACATTATCACTGTCAACGGAATCTGAAGTTGAGCTTAGTAAATTCCAGAACAGTCTAAGGATGTACCACAAGAATCAAGGAAAGCAAGTCATCTTTTTTGAGTGGGTTTCCAAACGCACTAGTCATGCCAATCTTCAGGTTGTTCCTGTTCCAACTTCCAAAGCAGCACTGGTTGAAAAAATATTCAATTTAGCAGCAGAAAAGCTGGGATTTAAATTTTTGTCTAAGAAATTTGATAGCAATTCTGATGGAAGAAATTTTTTGAGGACACAATTTGATGGGAATTCAAGTTTGTTCTATGTTGAACTACCAGGAAGCGCAATATTGTTGCATCAAGTTGAAGACAATGAGAAATTTCCTGTCCAATTTGGTCGTGAGGTTGTATCAGGCTTGCTCAATATAGCGGATAAGGCAGATTGGAGGAATTGCAAATATAGCAAGGAGGAAGAAACAAAAATGGTGGAAGATTTTAAGAGCCGATTTCAAGAATTTGATCCAAATTACAAGTCAATAGTTGGAGGTTTACTCACGACTGGGGCGTCGCGTGCGGGTATAACCTTGCTCCTAGCTAGTTTCACCTTTGGGCGAGACTCAGAGTCATCAGTTCAACTACAAGATCCGTCTTTGATCTCCGTTTCTCTGATGTCCGGTCCCCGTTTCGTTGTACCCGACCCTGTCTGTGTTGATGCTGGCCATCGGTCTCGTCCTGACTGCCTCTTTCTTCATAGTATTAGAAGAAATAGTGCATTGATAGTAAAAGCTATAGCCATAGCAATCAACGAAACTTTGAGGGCTTTATATGAAACGACCTCTTCTAGGAAAAGCCGTTCTCTTGCCAAGGAACTGACAACTGCAGCCGTGGCATCGTTCTTCTTGGGTTTTGGGTCCTTGTTCCTCCTACTTGCTTCTGGCGTTTATGTCTAG 2214 0.4295 MAPRILLCGDVLGRLNQLFKRVSSVNKSAGPFDALFCVGQFFPESPDQLDEFMHYIEGRTNFPLPTYFIGDYGVGAPKVLLSASKDPANRGFKMDGLRVCDNLYWLKGSGKFTLLGLSVAYLSGRQASEAQQFGVYSQDDVDALRAIAEEPGIIDFGVTNRANVSDIPAGLSDSMGSDSIIAELVGEIKPRYHIAGSKGIYYAREPYSNIEAVHVTRFLGLATVGNKDKQKFIHAISPTPASAMSSTEIAMKTTNTTLSPYTFVEKGTSPKDTAKRSSDSVSDSQYWRYDVSQKRQKHGTGGGDKLCFKFLSSGSCPRGEKCNFRHDLDAREHYTRGVCFDFLNKGICERGPDCNFKHSLQDEGENYADKRPRSQNSSSNRSKECWFCLSSPNVESHLITSIGENYYCALAKGPLVEDHVLLIPVEHLASTLSLSTESEVELSKFQNSLRMYHKNQGKQVIFFEWVSKRTSHANLQVVPVPTSKAALVEKIFNLAAEKLGFKFLSKKFDSNSDGRNFLRTQFDGNSSLFYVELPGSAILLHQVEDNEKFPVQFGREVVSGLLNIADKADWRNCKYSKEEETKMVEDFKSRFQEFDPNYKSIVGGLLTTGASRAGITLLLASFTFGRDSESSVQLQDPSLISVSLMSGPRFVVPDPVCVDAGHRSRPDCLFLHSIRRNSALIVKAIAIAINETLRALYETTSSRKSRSLAKELTTAAVASFFLGFGSLFLLLASGVYV 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g1038 737 SUPERFAMILY CCCH zinc finger 305 331 IPR036855 GO:0046872
Lele19g1038 737 ProSiteProfiles Zinc finger C3H1-type profile. 301 329 IPR000571 GO:0046872
Lele19g1038 737 CDD MPP_CWF19_N 6 224 - -
Lele19g1038 737 FunFam Zinc finger CCCH domain-containing protein 59 362 487 - -
Lele19g1038 737 Pfam Oligosaccharyltransferase subunit 5 695 737 IPR007915 GO:0006487|GO:0034998
Lele19g1038 737 Gene3D - 358 497 IPR036265 -
Lele19g1038 737 Pfam Protein similar to CwfJ C-terminus 1 376 492 IPR006768 -
Lele19g1038 737 Pfam Protein similar to CwfJ C-terminus 2 517 595 IPR006767 -
Lele19g1038 737 Gene3D - 290 357 - -
Lele19g1038 737 SUPERFAMILY CCCH zinc finger 333 362 IPR036855 GO:0046872
Lele19g1038 737 SMART c3hfinal6 303 328 IPR000571 GO:0046872
Lele19g1038 737 SMART c3hfinal6 335 360 IPR000571 GO:0046872
Lele19g1038 737 ProSiteProfiles Zinc finger C3H1-type profile. 334 361 IPR000571 GO:0046872
Lele19g1038 737 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 4 597 IPR040194 -
Lele19g1038 737 SUPERFAMILY HIT-like 383 457 IPR036265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g1038 Lele-ChrLele19 6677835 6685603 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele19g1038 CwfJ_C_1 7.9e-38 CL0265