Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g1030 ATGGAATCTAGAATTACCAATTCCGATTCCAACGATATCAGCAATTATCATGGAAGCGGAGTTTGCTGCATAGCCAGCAGTTCCCAAACTCGTTTCACTACTCCGGAAGCTTCACCTCCTTCAGATGTTGCCGCCCTAAGGCGCCTCTCCGAGAACGTCGCCTCAATCTTCGAAGCTTCGGAGTCCGATGACTTCTTTGCCGACTCCAGAATCGTTCTCGGAGACGGTAGGGAAGTTGCCGTTCACCGCTGCATTCTGGCGGCGAGAAGCCCTTTCTTCAAGAGCGTGTTCTCTGGGAAGGAGAGGAATGGGGTCAACTTGGAATTGAAGGAATTGGCTAAGGATTACGAGGTTGGTTTCGATGCGATTGTGGGCGTTGTTAGTTATTTGTATAGTGGGAAAGTAAGGTCGTCGCCCGAGGGTGTTTGTGTGTGTGTGGACGATGATTGCTTCCATCTCGTCTGTCGACCTGCTGTGGAATTCATGGCTCAACTGCTCTATGCTTCTTCGACTTTTGAAATATCTGAGTTGGTTGATCTTTATCAGAGGCATCTGCTACAAATTATTGACAAGGTAGCAGCAGATGAAATTTTGCTGGTTCTCTCTGTTGCAAATATATGTGGTAAATCCTGTGAGACACTGCTAACAAGGTGTACTGAGTTGATTGTTAAATCTGATGTTGATGTGATCACCCTTGAAAAAGCTCTGCCACAGCATATTGTGAAACGAATTATTGATAAACGTATAGAACTAGGCTCAGACCATCCCCAGAAAATCTGTTTGCCAGATAAAGATGTGAAGAGAATACATAGGGCTCTTGATTCTGATGATGTTGAGTTAGTCAGGTTGCTCTTAAGAGAGGGACATACTAATTTAGATGATGCTTATGCCCTTCACTATGCTGTTGCGTACTGTGATGCCAAGACCACAACTGAGCTTCTTGATCTCGGGCTCGCCGATGTTAATTGTAAAAATTCAAGGGGATATAGTGTGCTGCATGTGTCTGCAATGAGGAAGGAGCCTAAGATTATAGTGTCACTTTTGACAAAGGGAGCCCAGCCTTCTGATCTCACTTTGGATGGTAGAAAAGCCCTTCAAATTTCGAAGCGCCTCACTAAGGCGGTGGATTATTATAATGCTGAGGAAGGGAAGGCATCTTCTAGGGACAGATTGTGCATAGAGATATTAGAACAAGCTGAGAGAAGAGAGCCTTTACTTGGGGAGGCATCTTTCTCTCTTGCTATGGCAGGTGATGATTTGCGTATGAAACTGTTGTACCTTGAAAACAGAGTTGGATTGGCGAAGCTATTGTTTCCCATGGAAGCGAAAGTTGTGTTGGACATTACTCAAATTGATGGAACTTGTCCATTTTCTGATATATCTCAAAATGTGAGTACTAATACTCAGAGGACAGCTGTGGATCTGAATGAGGCACCTTTTAAAATAAAGGAGGAGCACCTAGCCAGGATGAGAGCACTCTCTAGATCTGTCGAATTAGGCAAGCGATTCTTCCCTCGGTGTTCGGAAGTTCTGAACAAGATCATGGATACTAATAACCTATCACAGATTGCATGTAAGGGTAATGACACTCCAGAAGAAAGACAAGCCAAGAGAAGAAGGTACATACAGCTCCAAGAGGTTCTAAGTAAGGCTTTCAATGAGGACAAGCAGGAGTTTGATAAGTCTGCTGTCTCATCATCTTCTTCTTCAGCATCAATAGGAATGGTTAGGAATAGAAATCCTATGAATGAACTAGACTCAACATTAAATTCTAATTCCAATGGTTAG 1788 0.4368 MESRITNSDSNDISNYHGSGVCCIASSSQTRFTTPEASPPSDVAALRRLSENVASIFEASESDDFFADSRIVLGDGREVAVHRCILAARSPFFKSVFSGKERNGVNLELKELAKDYEVGFDAIVGVVSYLYSGKVRSSPEGVCVCVDDDCFHLVCRPAVEFMAQLLYASSTFEISELVDLYQRHLLQIIDKVAADEILLVLSVANICGKSCETLLTRCTELIVKSDVDVITLEKALPQHIVKRIIDKRIELGSDHPQKICLPDKDVKRIHRALDSDDVELVRLLLREGHTNLDDAYALHYAVAYCDAKTTTELLDLGLADVNCKNSRGYSVLHVSAMRKEPKIIVSLLTKGAQPSDLTLDGRKALQISKRLTKAVDYYNAEEGKASSRDRLCIEILEQAERREPLLGEASFSLAMAGDDLRMKLLYLENRVGLAKLLFPMEAKVVLDITQIDGTCPFSDISQNVSTNTQRTAVDLNEAPFKIKEEHLARMRALSRSVELGKRFFPRCSEVLNKIMDTNNLSQIACKGNDTPEERQAKRRRYIQLQEVLSKAFNEDKQEFDKSAVSSSSSSASIGMVRNRNPMNELDSTLNSNSNG 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g1030 595 MobiDBLite consensus disorder prediction 556 595 - -
Lele19g1030 595 CDD BTB_POZ_NPR_plant 47 189 - -
Lele19g1030 595 ProSiteProfiles BTB domain profile. 67 139 IPR000210 GO:0005515
Lele19g1030 595 SMART ANK_2a 327 356 IPR002110 GO:0005515
Lele19g1030 595 SMART ANK_2a 293 323 IPR002110 GO:0005515
Lele19g1030 595 SMART ANK_2a 264 292 IPR002110 GO:0005515
Lele19g1030 595 MobiDBLite consensus disorder prediction 562 595 - -
Lele19g1030 595 SUPERFAMILY Ankyrin repeat 267 369 IPR036770 -
Lele19g1030 595 Gene3D Potassium Channel Kv1.1; Chain A 42 224 IPR011333 -
Lele19g1030 595 Pfam Domain of unknown function (DUF3420) 226 270 IPR024228 -
Lele19g1030 595 Pfam NPR1/NIM1 like defence protein C terminal 369 570 IPR021094 -
Lele19g1030 595 SMART BTB_4 67 189 IPR000210 GO:0005515
Lele19g1030 595 FunFam BTB/POZ domain and ankyrin repeat-containing protein NPR1 238 390 - -
Lele19g1030 595 PANTHER REGULATORY PROTEIN NPR3 24 573 IPR044292 GO:0009862|GO:2000022|GO:2000031
Lele19g1030 595 Gene3D - 239 488 IPR036770 -
Lele19g1030 595 SUPERFAMILY POZ domain 50 188 IPR011333 -
Lele19g1030 595 Pfam BTB/POZ domain 60 187 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g1030 Lele-ChrLele19 6609411 6612609 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lele19g1030 NPR1_like_C 9e-85 No_clan