Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g1006 ATGGAGAACTTCGGCCACGAATTCAATCATTACTGGGAGACGCAAATGTTCTACCAAACAGAAGAGCTTGATAGCTGGGGACTGGACGAGGCAATTTCCGGCTACTACGACTCGAGCTCGCCTGACGGCAACGCTTCGTCGTCGACGGCCTCCAAGAACATAGTCTCGGAGAGGAATCGCAGGAAGAAGCTCAACGAACGGCTCTTCGCCCTCAGAGCAGTGGTTCCTAACATTAGCAAGATGGATAAGGCATCGATAATAAAGGATGCGATTGAGTACATTCAACACTTGCACGAAGAAGAGAAAAGCATCGAAGCAGAGATAATGGAGCTTGAATCTGGGAAGAACATGAACAACATGAACATGGTGATGAACAGCAACTGTGGGAATCAGAATTCAAGCTTTGAATATGAGCAAGACCTGCCTGTGCTTCTCAGGTCCAAGAGGAACAAGACAGAGCAGCAGCAGCTTTTTGAGTCCTTCAGCTCAAGAAGTCCCCCCATTGAAGTCCATGAGCTAAGAGTGACATACATGGGAGAGAAGACAGTAGTGGTGAGCTTGACGTGCGGGAAGAGGACAGACACAATGGTAAAGCTGTGTGAAGTGTTTGAATCGTTGAAGCTCAATATTATCACTGCCAACATCACTTCCTTCTCTGGCCTCCTCCTCAAGACCGTCTTCATTCAGGCAGATGAAGAAGAGAAAGATGTTGTACAGATAAAGATCCAAGCAGCCATTGCAGCTCTGAATGATCCTGAAAGCCCCATGAGCCTGTAA 777 0.4749 MENFGHEFNHYWETQMFYQTEELDSWGLDEAISGYYDSSSPDGNASSSTASKNIVSERNRRKKLNERLFALRAVVPNISKMDKASIIKDAIEYIQHLHEEEKSIEAEIMELESGKNMNNMNMVMNSNCGNQNSSFEYEQDLPVLLRSKRNKTEQQQLFESFSSRSPPIEVHELRVTYMGEKTVVVSLTCGKRTDTMVKLCEVFESLKLNIITANITSFSGLLLKTVFIQADEEEKDVVQIKIQAAIAALNDPESPMSL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g1006 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 113 IPR036638 GO:0046983
Lele19g1006 258 Coils Coil 94 114 - -
Lele19g1006 258 MobiDBLite consensus disorder prediction 38 57 - -
Lele19g1006 258 Pfam Helix-loop-helix DNA-binding domain 55 98 IPR011598 GO:0046983
Lele19g1006 258 SMART finulus 54 103 IPR011598 GO:0046983
Lele19g1006 258 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 44 116 - -
Lele19g1006 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Lele19g1006 258 MobiDBLite consensus disorder prediction 38 54 - -
Lele19g1006 258 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 40 244 - -
Lele19g1006 258 Gene3D - 42 114 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g1006 Lele-ChrLele19 6365965 6371676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g1006 6 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 60.177 9.39e-82 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele19g1006 HLH 4.5e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0535 17 17526984 17532999 Lele19g1006 19 6365965 6371676 hybridization
Lele18g0977 18 6421041 6426166 Lele19g1006 19 6365965 6371676 hybridization