Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g1001 ATGCGGGATAGTGAGAAGAATGTAAATATCAGAGGATCTAGAAAATACAAGAATTCAAATGCGCAAACTGAGTTAAAGGCATGCTCATCATTGAAATTCAAAACCGGTAGCCCAAAATCCCAAGTGAAGAAGCATAAATTAAAACCAAAATCTCGTGCACATGGAGTTGGTGCAAATATATCAAGGAAGGCTGTCACTGATTCTATAAAGGAGGACCCAAGCAATGACTTTTCAGATAAATACTTGATCATTAGAAAAAGTCTACATAAAACCAAAGGAAATCCATCACACAAGCCCAGCTCATCAAAGCCTCAAGGTGAAAAGGTTTCTCTTGGATCTAAGAAAGAGGGTAAAGATGTTGACGGGGACGTAAATACTCAGAAGCTTAAAAGGAGAGGGAGAAAAAAGAAAAATCAAAGAAATAATTTGGATCTTGATGATGCTTCACGCCTGCAGAGGAGACTAAGGTATCTTCTGATTAAAATAAAGCGGGAGCAGAACCTCATTGATGCCTATTCTGGAGAAGGTTGGAAAGGTCAGAGTCAGGAGAAGATCAGGCCAGAAAAGGAGTTGCTAAGAGCTCGGAAGCAGATTTTACAATGTAAGCTTAGTATTCGTGATGCCATTCACCAGTTGGATACTCTTAGTTCCGTGGGTAGCATTGAGGGCTCTGTCATTGCTCCAGATGGATCTGTTTACCATGAACATATATTCTGTGCAAAGTGCAAATTGCGTGAAGCTTTCCCAGATAATGATATTATACTATGTGATGGCACCTGTAACCGTGCTTTTCACCAAAAATGTCTTGATCCTCCATTGGACACTGAAAATATTCCTCCTGGAGATCAGGGCTGGTTTTGCAAGTTTTGCGAATGTAAGATGGAAATACTGGAGGCAATAAATGCTCATCTTGGGACTCATTTCTCCCTAGACAGCACTTGGCAGGATGTATTCAAGGAAGAAGCTTCCATACTTGATGGTGATTCTAGTTTACTGAATCCAGAAGAAGAATGGCCATCAGATGAATCTGATGATGATGATTATAATCCTGAAAGGAGAGAGGATAGCCGGAATATCAGTGCAGAGGATATTGATGGTGATGCATCTGATGATTCAAGCAGTTCTACCAGTCTATGGAATTCAGATGATGGATATTCTCCAGGAATAGGAAAGGAAAGCATTGACCATGAATTTTTCTCTGCGAATAGTTGTATAGATTCTGACGAATCTGGAGAGACAGCATGTGGCCTGAGGCAGCGGAAAGCAGTTGACTACAAGAAACTCTATGATGAAATGTTTGGGAAAGATGCTCCTGCACTTGAACAAGTTAGTGAAGATGAAGACTGGGGTCCAGGCAGAAGAAAGCGAAGAGAAAAAGAATCTGATGCTGCTAATACTCTGATGACTCTCCATGAAAGTGACAACAAATGTTCCAATAACGAGCAGAATGTGGTAAAGGAATTTTCTTCAGACTTCCAAAGTAAAAGGCCTTGTTTCAGGCTTCCACGCCATGCCGTTGAGAAGCTTCGCCAGGCATTTTCAGAGAATGAACTTCCTCCCAAATCCGTGAAGGATGGTCTTTCAAAGGAGTTGGGACTAGATGCTGATAAGGTTAGCAAATGGTTCAAAAATGCACGTTACTTAGCACTTAAAACCAGAAAGCAAACAGAAGGAGCAGAACAGTCTCAAAGCGTCACTTCTAGAAACCCAGAAGATTCTAATTTACAAAATTTGGATATAGAGCCTTTGACATCAAAGGAAACCACAAAAGTAACTTTGACAGAAGCCCAGACGAATGCTACAAATGACAGCCACAAAAAGCGCTTAAAGTCATCCCGTGGTAATCCTTTGAAAAAAAGGAAGCAAGAGATATCTCCACCTCAATCAAAAGAAAATGGCAAGAAGGACTTGGTGGATTTCAGTGATGATGTTAGCTTGAAGAAACTGTTGAAAGCAAAAAGGAAGAAAGTAACTTATAAATTTGAGGGAGACTCTGAAGCAGCAGAGTTAGAAATTGAAAGACTTAGCAAACTGAAGAATAGAGTAGACAGTATGAAGCAAAAAGTTCTTAAAATTAAAAGTCACACAGCAAAGGGTTTAGAAGAACCCAAATCCAAAGACCCCTTGGTTATATATGTTCCTGTAGCTGAGTTAAAAGAAAAAAGTTGA 2169 0.4002 MRDSEKNVNIRGSRKYKNSNAQTELKACSSLKFKTGSPKSQVKKHKLKPKSRAHGVGANISRKAVTDSIKEDPSNDFSDKYLIIRKSLHKTKGNPSHKPSSSKPQGEKVSLGSKKEGKDVDGDVNTQKLKRRGRKKKNQRNNLDLDDASRLQRRLRYLLIKIKREQNLIDAYSGEGWKGQSQEKIRPEKELLRARKQILQCKLSIRDAIHQLDTLSSVGSIEGSVIAPDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNRAFHQKCLDPPLDTENIPPGDQGWFCKFCECKMEILEAINAHLGTHFSLDSTWQDVFKEEASILDGDSSLLNPEEEWPSDESDDDDYNPERREDSRNISAEDIDGDASDDSSSSTSLWNSDDGYSPGIGKESIDHEFFSANSCIDSDESGETACGLRQRKAVDYKKLYDEMFGKDAPALEQVSEDEDWGPGRRKRREKESDAANTLMTLHESDNKCSNNEQNVVKEFSSDFQSKRPCFRLPRHAVEKLRQAFSENELPPKSVKDGLSKELGLDADKVSKWFKNARYLALKTRKQTEGAEQSQSVTSRNPEDSNLQNLDIEPLTSKETTKVTLTEAQTNATNDSHKKRLKSSRGNPLKKRKQEISPPQSKENGKKDLVDFSDDVSLKKLLKAKRKKVTYKFEGDSEAAELEIERLSKLKNRVDSMKQKVLKIKSHTAKGLEEPKSKDPLVIYVPVAELKEKS 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g1001 722 MobiDBLite consensus disorder prediction 350 364 - -
Lele19g1001 722 ProSiteProfiles 'Homeobox' domain profile. 492 552 IPR001356 GO:0003677
Lele19g1001 722 ProSitePatterns Zinc finger PHD-type signature. 239 290 IPR019786 -
Lele19g1001 722 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 287 IPR013083 -
Lele19g1001 722 MobiDBLite consensus disorder prediction 439 462 - -
Lele19g1001 722 Coils Coil 668 688 - -
Lele19g1001 722 CDD PHD_PRHA_like 238 290 IPR045876 -
Lele19g1001 722 MobiDBLite consensus disorder prediction 38 52 - -
Lele19g1001 722 MobiDBLite consensus disorder prediction 94 108 - -
Lele19g1001 722 MobiDBLite consensus disorder prediction 552 637 - -
Lele19g1001 722 MobiDBLite consensus disorder prediction 555 600 - -
Lele19g1001 722 FunFam pathogenesis-related homeodomain protein-like 230 290 - -
Lele19g1001 722 MobiDBLite consensus disorder prediction 109 128 - -
Lele19g1001 722 MobiDBLite consensus disorder prediction 1 72 - -
Lele19g1001 722 FunFam pathogenesis-related homeodomain protein 494 558 - -
Lele19g1001 722 SUPERFAMILY Homeodomain-like 494 559 IPR009057 -
Lele19g1001 722 Gene3D - 494 561 - -
Lele19g1001 722 MobiDBLite consensus disorder prediction 335 349 - -
Lele19g1001 722 ProSiteProfiles Zinc finger PHD-type profile. 236 293 IPR019787 -
Lele19g1001 722 MobiDBLite consensus disorder prediction 325 392 - -
Lele19g1001 722 CDD homeodomain 495 555 IPR001356 GO:0003677
Lele19g1001 722 MobiDBLite consensus disorder prediction 13 37 - -
Lele19g1001 722 MobiDBLite consensus disorder prediction 601 637 - -
Lele19g1001 722 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 33 721 - -
Lele19g1001 722 SMART PHD_3 238 291 IPR001965 -
Lele19g1001 722 Pfam PHD-finger 238 293 IPR019787 -
Lele19g1001 722 MobiDBLite consensus disorder prediction 88 145 - -
Lele19g1001 722 SUPERFAMILY FYVE/PHD zinc finger 230 296 IPR011011 -
Lele19g1001 722 SMART HOX_1 494 556 IPR001356 GO:0003677
Lele19g1001 722 Pfam Homeodomain 503 547 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g1001 Lele-ChrLele19 6329114 6333950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g1001 141 561 Homeobox Transcription Factor Family AT4G29940 59.677 3.24e-160 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Lele19g1001 Homeodomain 5.1e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0539 17 17570675 17580766 Lele19g1001 19 6329114 6333950 hybridization
Lele18g0973 18 6389593 6394183 Lele19g1001 19 6329114 6333950 hybridization