Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0979 ATGGAGTGGGACAGCGATTCCGATCTCAGCGCGGATGAGGACGAGAGTTTCATGTTCGACGATGCTGGTCCTCTTCCCTTCCCCGTCGGCAACTTGCTCCAAACGGCGCCGTGTGGGATTGTCGTCACGGACGCTCTCGAGCCGGACCATCCTATTATATATGTCAATACGGTGTTCGAGATGGTCACTGGGTATCGGGCAGAGGAAGTGCTTGGTCGCAACTGCCGTTTCTTGCAGTGTCGAGGCCCATTTGCTAGGAGAAGGCATCCATTAGTAGACTCAGCAGTAGTTTCAGAAATTAGGAGATGCCTTGTGGAGGGGATCGAATTCCAAGGTGAGTTGCTGAACTTTAGGCAAGATGGATCTCCACTGATGAACAGATTGCGTTTGACACCCATATATGGGGATGATGAGACTATAACACATGTCATTGGAATTCAGTTATTCGCAGAGGCAAACATTGATCTTGGTCCTGTCCCAGGTTCTACAATTAAGGAATCTGCTAAGTCATCTGATCGATTTCGTTCTTCTGCCCTTGCCTCATTATGTCCTCCTCCAACAGGGGACCGTAATGTTTCTCGTGGATTTTGTGGGATATTGCAGTTGAGTGATGAGGTGTTGTCTCTCAAGATACTCTCTCGCTTAACTCCAAGAGATATTGCATCGGTTGGCTCTGTTTGCAGGCAATTGTATGAGCTAACAAGAAATGAAGATCTTTGGAGAATGGTATGTCAAAATGCATGGGGAAGTGAAACTACACGTGTTTTAGAGACTGTGCCTGCTGCAAGAAGACTTGGATGGGGTAGGCTGGCGAGGGAATTGACAACTCTTGAAGCTGCAGCATGGAGAAAGTTGACTGTTGGGGGTGCTGTTGAACCCTCACGTTGTAATTTTAGTGCTTGTGCAGTTGGTAACAGAGTTGTGCTATTTGGGGGTGAAGGGGTTAACATGCAACCTATGAATGACACCTTTGTATTAGATCTCAATTCTCGTAATCCTGAGTGGCAACACGTCCAGGTGAGCTCTCCTCCTCCTGGTCGTTGGGGCCATACACTTTCTTGTGTTAATGGTTCTCATTTGGTTGTATTTGGAGGCTGTGGAAGGCAGGGTTTGCTCAATGATGTGTTTGTGCTGAATCTGGACGCAAAGCCTCCGACTTGGCGTGAAATTTCTGGATTGGCACCACCACTTCCCAGATCATGGCATAGCTCCTGTACTCTTGATGGAACTAAGTTGATTGTTTCTGGTGGCTGTGCAGATTCTGGAGTGCTTTTGAGTGATACATTCCTGCTTGATCTGTCAATGGAGAAACCTGTTTGGAGAGAGATACCAGTTGCATGGACCCCACCTTCTCGTCTGGGCCACACATTGTCTGTCTATGGTGGTAGGAAAATACTGATGTTTGGGGGTCTGGCCAAGAGTGGGCCATTACGATTCCGCTCTAGTGATGTATTCACGATGGATATGAGTGAGGAGGAGCCATGTTGGACATGTGTAACTGGCAGTGGAATGCCCTGTTCTGGGAATCCTAGGGGTATAGCTCCTCCTCCTAGACTTGATCATGTGGCCATCAGTCTTCCTGGCGGGAGAATTCTGGTATTTGGAGGGTCTGTTGCAGGTCTTCATTCTGCCTCCCAGCTCTACATACTGGACCCAACTGATGAGAAGCCTACTTGGAGAATTTTAAATGTACCGGGGCGCCCCCCGAGATTTGCTTGGGGACATAGCACTTGTGTTGTTGGAGGGACAAGAGCTATTGTACTGGGTGGTCAGACTGGAGAGCAATGGATGCTAAGCGAGCTCCATGAGCTTTCTCTGGCAAATTCTGTGGAATTCTGTAAGTTGAACAATGAAATGGAGAGGGAAAGTCCTTCTACCCACTCAATCCCCATCCGATCCCTCCCTCTCTCTTTCCCTCTGTTGAGGCCATCTTCTTACAAATTTCTCACCTTTCTTCCATTTCTTTCAATTTCCCCATCAATGGCTATCAACAGAGAATCCACTCCTCCGCCTGCGATCGGCAAAATTGGTCCTTACACTGTTTTCATGACGCCGCCTTCTACCCCGAAGCCTTCCGACGCCGTTTTAGATTCGCCGAAGAAGGTTGTTCCTCCGCCGGTTCAATTGGATAAGTCCCTCTCCGGGAAATCCGTAGCAGATGGGTCTGTTCTGGATTTTTTCAAGAATGCTGTAACGAGAGTGCAAACTGCACACTCAAGTTTGGATGATCATTTAGCACGGTGGTTTGGGTTGGATCAGTCAAAGTACCAATGGGCACTTGATGATTATTATGAAAGCAAGGGAGTGGAACAAGGAGATATTAAAGTGAAAGAAATATCAAGCAAAGTACAGAATGTTTAG 2361 0.4765 MEWDSDSDLSADEDESFMFDDAGPLPFPVGNLLQTAPCGIVVTDALEPDHPIIYVNTVFEMVTGYRAEEVLGRNCRFLQCRGPFARRRHPLVDSAVVSEIRRCLVEGIEFQGELLNFRQDGSPLMNRLRLTPIYGDDETITHVIGIQLFAEANIDLGPVPGSTIKESAKSSDRFRSSALASLCPPPTGDRNVSRGFCGILQLSDEVLSLKILSRLTPRDIASVGSVCRQLYELTRNEDLWRMVCQNAWGSETTRVLETVPAARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSRNPEWQHVQVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLNLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDMSEEEPCWTCVTGSGMPCSGNPRGIAPPPRLDHVAISLPGGRILVFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEQWMLSELHELSLANSVEFCKLNNEMERESPSTHSIPIRSLPLSFPLLRPSSYKFLTFLPFLSISPSMAINRESTPPPAIGKIGPYTVFMTPPSTPKPSDAVLDSPKKVVPPPVQLDKSLSGKSVADGSVLDFFKNAVTRVQTAHSSLDDHLARWFGLDQSKYQWALDDYYESKGVEQGDIKVKEISSKVQNV 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0979 786 Pfam Kelch motif 452 503 IPR011498 GO:0005515
Lele19g0979 786 Pfam Kelch motif 519 566 IPR011498 GO:0005515
Lele19g0979 786 SUPERFAMILY Kelch motif 281 506 IPR015915 GO:0005515
Lele19g0979 786 FunFam Putative LOV domain-containing protein 477 610 - -
Lele19g0979 786 FunFam Putative LOV domain-containing protein 272 476 - -
Lele19g0979 786 Gene3D - 196 243 - -
Lele19g0979 786 FunFam Adagio protein 1 196 243 - -
Lele19g0979 786 CDD PAS 36 146 IPR000014 -
Lele19g0979 786 ProSiteProfiles PAS repeat profile. 32 107 IPR000014 -
Lele19g0979 786 SUPERFAMILY PYP-like sensor domain (PAS domain) 32 147 IPR035965 -
Lele19g0979 786 TIGRFAM sensory_box: PAS domain S-box protein 32 146 IPR000014 -
Lele19g0979 786 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 25 607 - -
Lele19g0979 786 Pfam Galactose oxidase, central domain 359 406 - -
Lele19g0979 786 Gene3D - 273 498 IPR015915 GO:0005515
Lele19g0979 786 Gene3D - 499 629 IPR015915 GO:0005515
Lele19g0979 786 Pfam F-box-like 207 245 IPR001810 GO:0005515
Lele19g0979 786 Gene3D PAS domain 22 158 - -
Lele19g0979 786 FunFam Adagio protein 1 27 158 - -
Lele19g0979 786 Pfam Galactose oxidase, central domain 295 345 - -
Lele19g0979 786 Pfam PAS domain 37 146 IPR000014 -
Lele19g0979 786 SUPERFAMILY F-box domain 191 258 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0979 Lele-ChrLele19 6106132 6120027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0979 33 183 AGC Kinase Gene Family AT5G58140 34.839 8.49e-20 92.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0564 17 17794171 17796724 Lele19g0979 19 6106132 6120027 hybridization
Lele18g0950 18 6127804 6132374 Lele19g0979 19 6106132 6120027 hybridization