Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0977 ATGTCGCCTGAATCGAGGACGAGACTGATCATTAGCTTGTGCACAAGTGTGCTTCCGCTCATAATAATGATTACCATATATATCTTTTACTGGAAAATATGTATGTACCAAAGGCGCAAACCAGCAAAAGTATCAGAACTTGAAAGTGGGAAGAACTCAGAGTTTCTAACATATAGAATGGATAAGTTTCTAAATGCCATGGAATCAGAAAAGCCAATCAGATTCACTTCACAAACGCTAATGCGTGCAACAAACAACTTCTCCAACATGTGGGGCTCAGGAGGGTTCGGATCAGTTTACAAAGGAACATTCAGTGATGGAACTGTTGTTGCAGTTAAAGTCCTACGTGGCATTTCTGATAAAAGAATGGAGGAACAATTCATGGCTGAAGTTGGCACTATTGGAAAAGTTCATCACTTAAACCTCGTTCGTCTCATTGGATTCTGCATTGAGAAGAACACGACAGCTTTAGTTTATGAGTTCATGAGCAATGGTTCTCTTGACAAATATCTGTTTAGTGAACATAAAACCTTAGAATTTGAGAAACTTCATGAGATTGCTGTTGGAACAGCGAAAGGAATTGCTTACTTGCATGAAGAATGCAAAGAGAGGATCATTCACTATGACATAAAACCAGAAAACATACTTTTGGATGATAATTTGCGTCCTAAAGTTGCTGATTTTGGTTTGGCAAAGCTTTGTAACCGAGACAAGTCTTATGTGACAATGACAGGTTTAAGAGGAACACCGGGTTATGCAGCACCGGAACTTTGGATGCCGTTTCGTGTGACTCACAAGTGCGATGTTTTCAGCTTTGGAATGTTGTTGTTTGAAATAATAGGAAGAAGAAGAAATCTGGAGATGAACCTCACAGAAAGTAGTAGTATAGAGTGGTTTCCAAGACAGGTTTGGATAAAGTTCGAGAGTGAGAATCTTCAAGAGCTAATAAATGATTGCGGGGTTACAGATGATAAAGAGGAGGAGAAAGTGGAAAGAATGGCGAAGATAGCATTTTGGTGTGTTCAGTATAGACCAGAATTGAGACCAATAATGAGTGTTGTGGTAAAAATGTTGGAAGGTTCCATGGATGTTCCAAACCCTTCGAACCCATTTCAACATTTGATGGAAGAAGAAGAAGAAGAAGATTATTCAATCAAAGCAGCACAAGCGGATGATGTTTCATCTCTTAAGGCAACTGAACCTTCCATTGTCTCATCCTTTGTGGAGATCGATATAGATTCTATCCAAAATTAA 1254 0.39 MSPESRTRLIISLCTSVLPLIIMITIYIFYWKICMYQRRKPAKVSELESGKNSEFLTYRMDKFLNAMESEKPIRFTSQTLMRATNNFSNMWGSGGFGSVYKGTFSDGTVVAVKVLRGISDKRMEEQFMAEVGTIGKVHHLNLVRLIGFCIEKNTTALVYEFMSNGSLDKYLFSEHKTLEFEKLHEIAVGTAKGIAYLHEECKERIIHYDIKPENILLDDNLRPKVADFGLAKLCNRDKSYVTMTGLRGTPGYAAPELWMPFRVTHKCDVFSFGMLLFEIIGRRRNLEMNLTESSSIEWFPRQVWIKFESENLQELINDCGVTDDKEEEKVERMAKIAFWCVQYRPELRPIMSVVVKMLEGSMDVPNPSNPFQHLMEEEEEEDYSIKAAQADDVSSLKATEPSIVSSFVEIDIDSIQN 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0977 417 Gene3D Transferase(Phosphotransferase) domain 1 162 378 - -
Lele19g0977 417 Gene3D Phosphorylase Kinase; domain 1 59 161 - -
Lele19g0977 417 PIRSF TyrPK_CSF1-R 320 407 - -
Lele19g0977 417 PIRSF TyrPK_CSF1-R 172 282 - -
Lele19g0977 417 PIRSF TyrPK_CSF1-R 10 91 - -
Lele19g0977 417 PIRSF TyrPK_CSF1-R 79 182 - -
Lele19g0977 417 FunFam serine/threonine-protein kinase PBS1-like 57 161 - -
Lele19g0977 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Lele19g0977 417 CDD STKc_IRAK 92 360 - -
Lele19g0977 417 ProSiteProfiles Protein kinase domain profile. 85 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele19g0977 417 SUPERFAMILY Protein kinase-like (PK-like) 65 359 IPR011009 -
Lele19g0977 417 PANTHER OS07G0415500 PROTEIN 14 371 - -
Lele19g0977 417 Pfam Protein tyrosine and serine/threonine kinase 88 358 IPR001245 GO:0004672|GO:0006468
Lele19g0977 417 SMART serkin_6 85 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele19g0977 417 FunFam Putative receptor-like protein kinase 162 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0977 Lele-ChrLele19 6090782 6092688 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0977 74 377 Receptor kinase-like Gene Family AT5G38280 43.087 5.32e-80 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Lele19g0977 PK_Tyr_Ser-Thr 1.7e-48 CL0016