Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0973 ATGGATTCGTCTTCAGAAGGTTCCACACTCGATCCATCTAAACGCAGCAAGTTGAGTATGGAAGAAAAAAGAGAACTTATCTATGAGATATGTAAGTCCCAGGATGCATCAGAGATGTTACAGTCATGGAGCCGACAAGAGATTTTGAAAATCCTGTGTGCAGAGATGGGAAAAGAAAGGAAGTACACTGGCTTGACAAAGTTGAAAATCATAGAAAATCTTTTAAAAATTGTCTCTGAAAAGAAGTCAGGAGACCAGGAAATTACAACAGATCTTGAACCACTTTCTCTTCCTGCAAATGAGCAGAAACCAGCTAAAAGGCAGAGAAAAACAGAGAATCCATCTCGATTGCCTCCTCCAGCAAACAATGGTCTAATCACTAATGGTGATGGAAATTTAGGCAGTAGTAGCACCACATACTGTAAAAATTCAGCTTGCAAAGCTACCCGAAGTCAAGAAGATGCATTTTGCAAAAGATGCTCGTGCTTCATTTGTCATCAATATGATGACAACAAAGATCCTAGCCTGTGGTTAATATGTAACTCTGACCCTCCATTTTGTGGTGTTTCTTGTGGCTTGTCATGCCATCTTGAATGTGCTTTAAAACATGATGGTTCCGGCATTGCCAAAAATGTAGCGCATCCCAAGCTTGATGGTGGTTTCTACTGTGTCTCATGTGGGAAAGTAAATGATTTGCTCGGATGTTGTAGAAAACAACTGTCAATGGCAAAGTGTACCAGACGTGTGGACATTCTTTGCTATCGTGTCTCCTTGACCCAAAAACTTTTACAAGGGACTGAAAAGTACAATAAACTTTACGAAATAATTGATGAGGCTGTGAAGAAACTTGAACCTGAGGTTGGCCCATTAACTAACTCACCAGCGAAGATTGGTAGGGGAATTGTGAACAGACTTTCTTCAGGACCAGAGGTCCAGAAACTCTGTGGTTCTGGTTTGGAATCGCTGGATTCATCACTTTCTGAAATGCTCTTGCCTCCATCACCCAGTCCTACAGATCAAGATACAAAATCGGATGCTTCAGATATGGTGGGATTTGAAGATGTCACTGCAACATCATTCACTGTAGTTTTGGGTTCTGAAAATCCATCTAGGGAAAATATTGTTGGTTACAGGTTGTGGCATCGTGCATCTCATGATGTGGACTATCCCTTGGACTCAACTTGCACATTGCATCTACCAGACAGAAGGTTCACCATCAGGGATCTAATTCCAGCTACAGAATACATCTTCAAAGTTGCTCCCTTCAATCCTTCGAGGGAGCTGAGCACGTGTGAAGCCCGTGTTTTGACTGAGCAAGGCGAGGAAGAAGCGCCCAACTGCTCAGCAACAGAAAGAAGTCAGAGCCAAGTAACAAACTGCAGCAGCCTTTCCAATCCTTCTTCAGTAGAAGATGAAACTAATAACAGTAATCCATATTGTGACCACCAGACCAATAACCGAGTGGAGAATTATCTTACTGATCAAAAGGACACTGACAAGGTTGCTTCAGGAGTTTTATCCCATGACCCCATTAACTGTTCCAACATAGGTGAAGGTAGACCTCCAGCAGATGCTGATTCCTTATCAGACAAGGAACATGCTGTAGCAAAGACTGGCCCTTTACCTGGTTCTGATGTGTTAAAGCTTGAAGAAAAGCACTCACCAGAGGAGCAAGTCACTGAGGACATGAGCACTGATAATGGGCGTAATTCGCCGGCTCAGGCTGGGAGGGACTGTGTGTTATTAGCAGGTAGCTCAGAGGAAGGCTTTCCTATTACTCCATGCAAGTTGGAAATGCTTAAGGATGGGCCAGGAAAAAAGGGGAGGTCAAAATCCAGTGGTAAGGCCAAGGCCAAGGATCAAGAAAATGAGTTTGGAAAGAGACAATACCCTCAAGATGGAAGCAAATTAAAGAAGAGAAAAGTGGAAAGGCAACAGCAAGTTGAGGAGCGTGATGCAGATGGGCTTTCTTCTGATGGGGATTTTGAGTATTATGTGAAGGTGATTAGAAGGTTAGAGTGTGAAGGACATATAGAGAAGAACTTTAGGCAGAAATTTCTGACTTGGTACAGCTTGAGAGCAACAGCCCAAGAAATTAGGGTTGTGAAAGTATATATTGATACATTTATTGAAGATCCAACATCTCTTGCAGAGCAGCTTGTGGACACTTTCTCAGACTGCTTATCAAGCAAGAGAACATCCATGGTGCCACCTGGGTTCTGCATGAAGCTTTGGCATTAA 2241 0.4279 MDSSSEGSTLDPSKRSKLSMEEKRELIYEICKSQDASEMLQSWSRQEILKILCAEMGKERKYTGLTKLKIIENLLKIVSEKKSGDQEITTDLEPLSLPANEQKPAKRQRKTENPSRLPPPANNGLITNGDGNLGSSSTTYCKNSACKATRSQEDAFCKRCSCFICHQYDDNKDPSLWLICNSDPPFCGVSCGLSCHLECALKHDGSGIAKNVAHPKLDGGFYCVSCGKVNDLLGCCRKQLSMAKCTRRVDILCYRVSLTQKLLQGTEKYNKLYEIIDEAVKKLEPEVGPLTNSPAKIGRGIVNRLSSGPEVQKLCGSGLESLDSSLSEMLLPPSPSPTDQDTKSDASDMVGFEDVTATSFTVVLGSENPSRENIVGYRLWHRASHDVDYPLDSTCTLHLPDRRFTIRDLIPATEYIFKVAPFNPSRELSTCEARVLTEQGEEEAPNCSATERSQSQVTNCSSLSNPSSVEDETNNSNPYCDHQTNNRVENYLTDQKDTDKVASGVLSHDPINCSNIGEGRPPADADSLSDKEHAVAKTGPLPGSDVLKLEEKHSPEEQVTEDMSTDNGRNSPAQAGRDCVLLAGSSEEGFPITPCKLEMLKDGPGKKGRSKSSGKAKAKDQENEFGKRQYPQDGSKLKKRKVERQQQVEERDADGLSSDGDFEYYVKVIRRLECEGHIEKNFRQKFLTWYSLRATAQEIRVVKVYIDTFIEDPTSLAEQLVDTFSDCLSSKRTSMVPPGFCMKLWH 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0973 746 Pfam PHD - plant homeodomain finger protein 141 260 IPR032881 -
Lele19g0973 746 MobiDBLite consensus disorder prediction 505 575 - -
Lele19g0973 746 SMART FN3_2 344 429 IPR003961 GO:0005515
Lele19g0973 746 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 746 IPR044514 GO:0010048|GO:0040029
Lele19g0973 746 MobiDBLite consensus disorder prediction 1 20 - -
Lele19g0973 746 MobiDBLite consensus disorder prediction 546 563 - -
Lele19g0973 746 CDD FN3 350 423 IPR003961 GO:0005515
Lele19g0973 746 MobiDBLite consensus disorder prediction 115 129 - -
Lele19g0973 746 MobiDBLite consensus disorder prediction 441 485 - -
Lele19g0973 746 MobiDBLite consensus disorder prediction 443 485 - -
Lele19g0973 746 Gene3D Immunoglobulins 341 448 IPR013783 -
Lele19g0973 746 MobiDBLite consensus disorder prediction 594 656 - -
Lele19g0973 746 SUPERFAMILY Fibronectin type III 352 424 IPR036116 GO:0005515
Lele19g0973 746 MobiDBLite consensus disorder prediction 83 129 - -
Lele19g0973 746 MobiDBLite consensus disorder prediction 600 656 - -
Lele19g0973 746 CDD PHD_VIN3_plant 161 226 - -
Lele19g0973 746 ProSiteProfiles Fibronectin type-III domain profile. 346 440 IPR003961 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0973 Lele-ChrLele19 6055362 6059400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0973 1 475 PHD Gene Family AT4G30200 54.438 1.85e-160 476