Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0972 ATGTTCACGGGGGGCCCTAAGTTTGAGGACTTCCTCGGTGGAGCCGCTCCAACAGCTCCCGCGCCTCCGCAGTTCTCTGCCGACAACACGCTGAGCACGGTGGTGGACAACGAGATATACGATTCAGAGCTGAAGACGATAGCCGCCAGCTTCCTTCGCGGCTTCGCTTCCGGAGGAGGGCAAGCCGAGACGCATCAGAAACGGTCGCAGCTGATTCCGGCAGAGCGGTCCCTGAAGAAGAGCGTCGACACCTTCGGCCAACGCACCTCCATCTACCGCGGCGTCACACGGCATAGATGGACGGGAAGATACGAAGCTCATCTATGGGATAACAGTTGCAGGAGGGAAGGGCAAAGTCGGAAAGGAAGACAAGGTGGCTACGATAAGGAAGAGAAGGCCGCCAGAGCTTACGATCTCGCGGCCCTCAAGTACTGGGGTCCGACCACCACCACCAACTTTCCGATTTCGAACTACCAGAAGGAACTGGAAGAGATGAAGAACATGACAAGGCAGGAGTTTGTTGCTTCTCTTCGAAGACATCACCAGCATGGCCGATGGCAGGCAAGAATAGGCAGGGTCGCCGGAAACAAGGACCTCTACCTTGGCACTTTCAGCACGGAGGAGGAAGCAGCGGAGGCGTATGATATAGCGGCGATAAAGTTCAGAGGAATAAATGCGGTAACCAACTTCGACATGAGTCGCTACGACGTTAAGAGCATTGCCAACAGCAGCCTTCCCATCGGTGGACTCTCCGGCAAGACCAAGAACTCAACAGACTCTTCTCCGTCCGACCGCCACGCCAAGAGCCCCGACGGAGCTCCATCCTCCGCCACAGACGACCGAGACCTCTCCTCAGTCAACTCCTCAGTCACTTTTGCTTCCCAACAACCGCCGCCGCCGCCGAGCTCTAACAATTCTCTCACATTTGCCATACCCATCAAACAGGACACTTGTTCAGATCATCATTACTGGTCCTCCGTTCTCGCCGGTTTCAACAAAAGTCCTTCCTTAACGATGCAACCATCTTCCACCACCAATGGCTCAGTGACATCTGCCCTACCCTTCAACATGGACCTCTCTACTCCTCCCTCCAGAACGAGCAGTACTACTGAAGGCGGCGGCAACAGCAACAACAATAGTAATGGGTTTTTCCGTGGAGGCATGTTTGTTCAACAAAGTGGGAATAGTAATAATGGTGGTGGTAGTGGTGGTTCATCTTCGTCTGGTTCGAGTCCTTCATTGATGATCCCATTGGCCACGCCCATTGCTTTAAATAGTAACCCTAGTTATGAGAGCTCTCCTGATTATGGAAACTGGAGCATCATTGGTCCTACCCTGCACACCTTCCAAACCCATGCAAAACCCCCTCTGTTTCAAACCCCAATTTTCGGCATCGAATGA 1401 0.5353 MFTGGPKFEDFLGGAAPTAPAPPQFSADNTLSTVVDNEIYDSELKTIAASFLRGFASGGGQAETHQKRSQLIPAERSLKKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGPTTTTNFPISNYQKELEEMKNMTRQEFVASLRRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGINAVTNFDMSRYDVKSIANSSLPIGGLSGKTKNSTDSSPSDRHAKSPDGAPSSATDDRDLSSVNSSVTFASQQPPPPPSSNNSLTFAIPIKQDTCSDHHYWSSVLAGFNKSPSLTMQPSSTTNGSVTSALPFNMDLSTPPSRTSSTTEGGGNSNNNSNGFFRGGMFVQQSGNSNNGGGSGGSSSSGSSPSLMIPLATPIALNSNPSYESSPDYGNWSIIGPTLHTFQTHAKPPLFQTPIFGIE 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0972 466 SUPERFAMILY DNA-binding domain 179 233 IPR016177 GO:0003677
Lele19g0972 466 SMART rav1_2 178 237 IPR001471 GO:0003700|GO:0006355
Lele19g0972 466 SMART rav1_2 91 160 IPR001471 GO:0003700|GO:0006355
Lele19g0972 466 MobiDBLite consensus disorder prediction 246 308 - -
Lele19g0972 466 CDD AP2 90 156 IPR001471 GO:0003700|GO:0006355
Lele19g0972 466 SUPERFAMILY DNA-binding domain 90 156 IPR016177 GO:0003677
Lele19g0972 466 Pfam AP2 domain 91 146 IPR001471 GO:0003700|GO:0006355
Lele19g0972 466 Pfam AP2 domain 177 223 IPR001471 GO:0003700|GO:0006355
Lele19g0972 466 ProSiteProfiles AP2/ERF domain profile. 91 154 IPR001471 GO:0003700|GO:0006355
Lele19g0972 466 ProSiteProfiles AP2/ERF domain profile. 170 231 IPR001471 GO:0003700|GO:0006355
Lele19g0972 466 PRINTS Ethylene responsive element binding protein signature 213 233 IPR001471 GO:0003700|GO:0006355
Lele19g0972 466 PRINTS Ethylene responsive element binding protein signature 92 103 IPR001471 GO:0003700|GO:0006355
Lele19g0972 466 Gene3D AP2/ERF domain 91 156 IPR036955 GO:0003700|GO:0006355
Lele19g0972 466 Gene3D AP2/ERF domain 176 233 IPR036955 GO:0003700|GO:0006355
Lele19g0972 466 MobiDBLite consensus disorder prediction 278 293 - -
Lele19g0972 466 CDD AP2 178 233 IPR001471 GO:0003700|GO:0006355
Lele19g0972 466 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 60 322 - -
Lele19g0972 466 MobiDBLite consensus disorder prediction 338 414 - -
Lele19g0972 466 FunFam AP2-like ethylene-responsive transcription factor ANT 90 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0972 Lele-ChrLele19 6044796 6047473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0972 38 466 AP2-EREBP Transcription Factor Family AT5G57390 51.502 5.74e-127 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lele19g0972 AP2 8.6e-10 CL0081