Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0947 ATGGGAATCGAGACGGGAAGCCTCAAGGGCTTTCGTACCGGAGGCTGGACCTTGCCGCCGAAGCCATGTGACTCTTGCAAATCGGCTGCCGCTGCAGTTTTCTGCCGAGCCGACTCCGCTTTTCTGTGCATGCTCTGTGACAACAAGATTCACTCCGCCAATAAGCTTGTTTCGCGGCATGAGCGTGTGTGGATGTGCGAGGTTTGCGAGCAAGCCCCTGCCTCCGTCACGTGCAAGGCTGATGCCGCCGCGCTCTGCGTCACGTGCGATTCTGATATCCATTCCGCCAATCCGCTGGCTCGCCGTCACGAGCGTGTCCCTGTGGAGCCCTTCTTTGATTCCGCTGACTCTGTGGCGAAAGCGTCCGCTGCTGCCTTTAACTTGTTGGTTCCAACTGATAACGGAATTGGATCCGATGGATTCCCTCAGGATGAATCCGAATCAGCATCATGGCTAATTTCTAATCCGAATTTCAACCCAAAGATCATGGATGTTCCGGATATCAAATCGGGCGACTTGTTTTTCCCGGAAATGGAGTGTCCATTCCTGGATTTTGATTACTCGAACTCCTTCGATCAGAAAAACAATAACAGAGAAGGTAATAATAACGATAGCGTAGTTCCAGTTCAAGTTCCGGTTATGAATCACACAGAGAGTTGCTTCGACATCGAGTTCTGCAGATCGAAGCTCTCTTCAATTAGCTACCCAAAGCAGTCGTTTAGTCGCCAAAGTGTCTCATCTTCTTCGGTTGACTTCGGAGTGGTCCCGGACGGAGGAAAAACGGTGTCGGAAATCTTGTTCCCGTTCGGCAGGCACATGAGTAACAGTTCAGAATCAAGCGGAATCATATCGGCCGGAAATTCCACAAACCAATCAGGAAGTTCGCTAAGTGGTGGTGGTATGAACCGGGAAGCTCGGGTTTTGAGATACAGGGAGAAGAGGAAGAACCGGAAGTTTGAGAAAACCATACGGTACGCTTCACGAAAGGCTTATGCAGAAACTCGGCCGAGGATCAAAGGGCGGTTCGCCAAGCGGACCGAGATGGTGTCGGACTTCGACCGGCTCTTCAGCTCGGTCGACCCCACCACAGATCTATTGCTTGATACTCAGTACGGCGTCGTCCCCTCGTTTTAA 1134 0.5159 MGIETGSLKGFRTGGWTLPPKPCDSCKSAAAAVFCRADSAFLCMLCDNKIHSANKLVSRHERVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFFDSADSVAKASAAAFNLLVPTDNGIGSDGFPQDESESASWLISNPNFNPKIMDVPDIKSGDLFFPEMECPFLDFDYSNSFDQKNNNREGNNNDSVVPVQVPVMNHTESCFDIEFCRSKLSSISYPKQSFSRQSVSSSSVDFGVVPDGGKTVSEILFPFGRHMSNSSESSGIISAGNSTNQSGSSLSGGGMNREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEMVSDFDRLFSSVDPTTDLLLDTQYGVVPSF 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0947 377 Pfam CCT motif 303 345 IPR010402 GO:0005515
Lele19g0947 377 ProSiteProfiles Zinc finger B-box type profile. 23 65 IPR000315 GO:0008270
Lele19g0947 377 ProSiteProfiles CCT domain profile. 303 345 IPR010402 GO:0005515
Lele19g0947 377 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270
Lele19g0947 377 MobiDBLite consensus disorder prediction 278 299 - -
Lele19g0947 377 SMART bboxneu5 66 108 IPR000315 GO:0008270
Lele19g0947 377 SMART bboxneu5 18 65 IPR000315 GO:0008270
Lele19g0947 377 MobiDBLite consensus disorder prediction 278 305 - -
Lele19g0947 377 Pfam B-box zinc finger 21 62 IPR000315 GO:0008270
Lele19g0947 377 Pfam B-box zinc finger 63 108 IPR000315 GO:0008270
Lele19g0947 377 CDD Bbox1_BBX-like 22 65 - -
Lele19g0947 377 CDD Bbox1_BBX-like 66 108 - -
Lele19g0947 377 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 22 358 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0947 Lele-ChrLele19 5880794 5882031 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0947 1 377 C2C2-CO-like Transcription Factor Family AT5G57660 51.546 9.80e-112 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lele19g0947 zf-B_box 4.6e-07 No_clan