Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0944 ATGAAGATGAACATTGACCTTGCTAGTCTCTCATATGTGTGTTTGCTATGGTTCTATGTAGAACCTTCGAAGGCGAAGGAGGCACAAGTACCAGTAGGGGTAGTTGTTGATCACAGCTCCTCCATTGGAAGAATGGCCGTGCGCTGCATAAAAATGGCTCATCAAGACTTCTATAAACACCATCCTCATTACCAAACAAGACTTGATCTTCGATTCAGGGATTCTGAGAACGATGTTGTCAGAGCAGCATCTGCAGCTTTCGATTTGATGAGGAATGAAAAGGTCCGTGCAATTATCGGACCTTTATATTCAGAACAAGCGAGGTTCGTAATACAACTTGGGGACAAAGTTGATGTGCCAATAGTCTCGTTTTCAGCCACAAGTCCATCTCTTTCTTCAATCCGAAGCAAATTTTTCATAAGGACAGCACAAGATGATCGCTCACAGGTGAAGGCCATAGCCGCCATTGTTGAGGCTTACGGATGGCACGAAATCATCCCAATCTACGAAGACACCGAATATGGCAACGGTCTGATACCATATCTCACGGACGCATTGGAAGATGTTAACACACGAGTGCCTTACAGAATCGCCATTGATATAAATTCTGAGGAATCCAAAATCTTAGAGAAGCTAAAGGAGCTAAATCAGAATCGAAAACGAATCTTTCTTGTTCACATGACTAGTCTTGTTGGGCCCAAATTCTTCTCAGCCGTGAACAAAGCTGGAATGATGAGGGAAGGGTATGGGTGGATAGTCACCGATGGGTTATCTAATTTCTTAGACCCTTTGGGTCCAAAAGTGATGGATTATATGCAAGGTGTATTAGGGGTAAGGCCTAAAGTGGAAAAGTCTAGAAAGCTTACGAGTTTCGGAAATAAATGGAAAGCTGTGTCCATGAAACCTCCATTAACGTTGTTTGGACTTTGGGCTTATGACACAGTTTGGGCGACAGCCATGGCAGTAGAGTCTACGTTTGCCAATTCTAAGGTTAATGACACACTTGTAGAAAGAATCCTAGATACTAAATTCCGAGGAATCTCTGGGGATTTCAATTTGAGTGAAGGACAACTCAAACCCTTAGAGCTTGAAGTATTCAATGTGGTAGGACGCAAAGAGAGGGTCATTGGATACTGGAGCCGAGAGAGAGGACTATTCCACGGGAACCATTCGAGTTCAAGAGATCGTCATCAGAAACTAATGGCACCATTATGGCCGGGAGAGACAACAAATCAACCAACCAAGTTGAGAATTGGGGTACCTGTAAGAAAGGGTTTTGTTGAATTCTTGAAGGTGCAAACACGGTCTTCAAGTAGTACTCCAGATGTTTCCGGCTTTACTTATGATGTGTTTCTCGAAGTGGTTAAAGCTTTACCTTTTCCTCTTCCATATGAGTTTTTCCCATTCCAGAAGAAGAATGGCGAAACTACTGAGTCCTATGACGAGCTTGTTCTCCAAGTTGAGAAAAAGGCAAGTTTTAGTACTATTCCTATTTGTCCAACTACACTGCAAGATGAAACAAAGTTGAAGCCATACGAGACGCCTGAAGAATATGATAGAGCTCTCTCCAGTGGTGAGGTTGCTGCAATCTTTGATGAAATCCCCTACGCAGAAGAAAGATGTCTTCGGTTGTTGCAGTTAAAGGCTCGAATAGTGAAGTGCTTATGGGATCGAAAGAATAGCTCTTTATCTTTGAATAGAAGCGATTCCAGAATATTCCCTTCAATAACAACCTTAGGGGCAGTCGACGGAAACCCTCAGAAGATGACGAGAAGTTTGCCCGGAAAAGCAGCAGTTCTTCCTGCAAGAGAATCAGTAGACAAGGCATGCTCAAGGTTTGTGTTGGTGTTATGGCTGATATTGGCATGTGTGCTCATGCAAAGTTACACAGCTTGCTTATCATCGATCTTAACAATACATCAGTTGCAACCTAGTTACTTTAGTGAGAATGATGTTATAAGTGATCCCAACATTAACATTGGATATCCTGGTGTCTCATTCTTAAGAGGCTTATTTGTCGATTGCTTGAAGATTGATAGTGGGAGGTTGAAGAACTACTCCGGTGTTGAAGAGTATAAGGAGGCTTTGGACAAAGGAAGCCGTAAAGGGGGTGTCGATGCTATTTTTAATGAAGTTTCATACCTTAAGATCTTCCTCAACCGCTATGGTTATTCTAATTATGCCTTGGTTGAAACCAGGCACCGCAATGATGGATATGGTTTTGCGTTCCCAAAAGGCTCCAACTTAACCTCGTACTTTTCAAGAGCCATATTAAATGTGAGAGAGAGTGAAGAAATGGACCTTATTGAGCATAAGTATTTTGGAAGCAATGACATATACAACGAAGGCAAAGACTTATCTAATGCATCATCAGACAGTAATGCAAGTCCCAGCCTTACTTGTTATAGCTTTGCAGGTCTATTCATGGTAATTGGAGTGTTTTCACTCTTAGCTTTACTTGTTTCTGAACATCATGTATGGATAAAACCTATTATAATAGCAAAAACATATGTCCAACGATTCTTGAGTCAGAGTTTTGAAAGAATTAATTCCATAATTAGAATGTTCTACGAGTACTAG 2580 0.4155 MKMNIDLASLSYVCLLWFYVEPSKAKEAQVPVGVVVDHSSSIGRMAVRCIKMAHQDFYKHHPHYQTRLDLRFRDSENDVVRAASAAFDLMRNEKVRAIIGPLYSEQARFVIQLGDKVDVPIVSFSATSPSLSSIRSKFFIRTAQDDRSQVKAIAAIVEAYGWHEIIPIYEDTEYGNGLIPYLTDALEDVNTRVPYRIAIDINSEESKILEKLKELNQNRKRIFLVHMTSLVGPKFFSAVNKAGMMREGYGWIVTDGLSNFLDPLGPKVMDYMQGVLGVRPKVEKSRKLTSFGNKWKAVSMKPPLTLFGLWAYDTVWATAMAVESTFANSKVNDTLVERILDTKFRGISGDFNLSEGQLKPLELEVFNVVGRKERVIGYWSRERGLFHGNHSSSRDRHQKLMAPLWPGETTNQPTKLRIGVPVRKGFVEFLKVQTRSSSSTPDVSGFTYDVFLEVVKALPFPLPYEFFPFQKKNGETTESYDELVLQVEKKASFSTIPICPTTLQDETKLKPYETPEEYDRALSSGEVAAIFDEIPYAEERCLRLLQLKARIVKCLWDRKNSSLSLNRSDSRIFPSITTLGAVDGNPQKMTRSLPGKAAVLPARESVDKACSRFVLVLWLILACVLMQSYTACLSSILTIHQLQPSYFSENDVISDPNINIGYPGVSFLRGLFVDCLKIDSGRLKNYSGVEEYKEALDKGSRKGGVDAIFNEVSYLKIFLNRYGYSNYALVETRHRNDGYGFAFPKGSNLTSYFSRAILNVRESEEMDLIEHKYFGSNDIYNEGKDLSNASSDSNASPSLTCYSFAGLFMVIGVFSLLALLVSEHHVWIKPIIIAKTYVQRFLSQSFERINSIIRMFYEY 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0944 859 SUPERFAMILY Periplasmic binding protein-like II 408 539 - -
Lele19g0944 859 Pfam Ligand-gated ion channel 603 812 IPR001320 GO:0015276|GO:0016020
Lele19g0944 859 Gene3D - 409 506 - -
Lele19g0944 859 SUPERFAMILY Periplasmic binding protein-like I 29 380 IPR028082 -
Lele19g0944 859 SMART GluR_14 415 776 IPR001320 GO:0015276|GO:0016020
Lele19g0944 859 CDD PBP1_GABAb_receptor_plant 32 386 IPR044440 -
Lele19g0944 859 Gene3D - 740 774 - -
Lele19g0944 859 SUPERFAMILY Periplasmic binding protein-like II 680 776 - -
Lele19g0944 859 PIRSF IGluLR_plant 498 542 IPR017103 -
Lele19g0944 859 PIRSF IGluLR_plant 1 496 IPR017103 -
Lele19g0944 859 PIRSF IGluLR_plant 596 847 IPR017103 -
Lele19g0944 859 PANTHER OS06G0188250 PROTEIN 13 364 - -
Lele19g0944 859 FunFam Glutamate receptor 145 300 - -
Lele19g0944 859 Pfam Receptor family ligand binding region 50 369 IPR001828 -
Lele19g0944 859 Gene3D - 689 739 - -
Lele19g0944 859 Pfam Bacterial extracellular solute-binding proteins, family 3 694 775 IPR001638 -
Lele19g0944 859 Gene3D - 152 314 - -
Lele19g0944 859 Gene3D - 59 151 - -
Lele19g0944 859 Gene3D - 595 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0944 Lele-ChrLele19 5784168 5792629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0944 27 801 Ion Channels AT2G24720 34.179 6.90e-148 457