Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0943 ATGACCATGTCAAGCCTGAGGAAGAAGAAGAGCTTTAACCTTTGCATCTGGTTGCGTTGCTTTTGTACTACTTTTTTGCTATGGTTCTTTATAGAACCTTCCAAGGCAAAAAAGGAGGCAAAGATACCAGTAGGGGTAGTTGTTGATCTTAACTCGTCGATTGGAATTATGGTCATGCGCTGCATACAAATGGCTCATCAAGACTTCTATAAGCACTATTCTCATTACCAAACAAGACTTGATCTGAGAATCAGGGATTCTCAGAATGATGTCGTCACAGCAGCTTCTGCAGCTTTCGATTTGATGAGGAAAGAAAAGGTGCATGCAATAATCGGACCTTCATTTTCAGAACAAGCGAGATTTGTAATACAACTTGGGCAAAAATATCTGGTGCCCATCGTCTTGTTTTCAGCCACAAGTCCATCGCTTCCTCCAATCCGAAGTAAATATTTCGTAAGGACAGCACAAGATGATCGCTCACAGGTGAAGGCCATAGCCGCCATTGTTGAGGCTTACGGATGGCACGAAATCATCCCAATCTACGAAGACACCGAATATGGCAACGGTCTGATACCATATCTCACGGACGCATTGGAAGATGTTAACACACGAGTGCCTTACAGAATCGCCATTGATATAAATTCTGAGGAATCCAAAATCTTAGAGAAGCTAAAGGAGCTAAATCAGAATCGAAAACGAATCTTTCTTGTTCACATGACTAGTCTTGTTGGGCCCAAATTCTTCTCAGCCGTGAACAAAGCTGGAATGATGAGGGAAGGGTATGGGTGGATTGTCAGCGATGGATTATCCAATACGTTAGAACCTTTGGGTCCAAAAGTGATGGATTCTATGCAAGGTGTCTTGGGGGTAAGGCCAAAAGTGGAAAAGTCTAGAAAGCTTACAAGTTTCAGAAATAAATGGAAAGCTTTGTCAATTAAACCTCCATTAACGTTGTTTGGACTTTGGGCTTATGATACAGTTTGGGCGATAGCCATGGCAGTAGAATCTACGTTTGCAGATTCTAAGGGTAATGAGACACTTATAGATAGGATCCTAGATACTAAATTCGAAGGGCTTTCTGGGGATTTCAATTTGAGTGAAGGACATCTCAAACCCTTGGAGCTTGAAGTATTCAATGTGGTAGGACGCAAAGAGAGGGTCATTGGACGTTGGAGCCCAGAGAGAGGACTATTCCACGAGAAACTAAAGAGAGGACTATTCCACGAGAAACTAAGGGCACCAATATGGCCGGGGGACACAACAAATCAACCAACCAAGTTAAGAATTGGGGTTCCTGTAAGAAAGCGTTTTGTTGAATTCTTGAAGGTGGAAAAACGTTCTTCAAATAGTACTCCAGATGTTTCTGGCTTTACTATTGATGTGTTTCTCGAAGTCGTCAAAGCTTTACCTTTTCCTCTTCCATATGAGTTTATCCCATTCCAGAAGAAAACTGGAGAAAGTACGTCCTATGAGGAACTTGTTCTCCAAATTGAGAAAAAGGCAAGTTTTCCGTTTAAGGATAAAAATCCTGGTACACTTTCTATTTGTCCAAGTTCCATGTTAACTGTGCAAAGATTGCAGCCAAAGTTCATGGATGTGAAAGAAATAAAAAAGAATAATTACTGTGTGGGGCATCAGAAGGGATCCTTCGTGAAGAAGATTCTAATAAATCAATTGGGATTCAGAGAGTCAAAGTTGAAGCCATACGAGAGGCCTGAAGAATATGATCGAGCTCTCTCCAGTGGTGAGATTGCTGCATTCTTTGATGAGATCCCTTATTTGAAACTCTACCTTTCAAAATACGGTTCCAAGTATGCTATGGTGGGGCCCACCTACAAAACTGCTGGATTCGGCTTCGCATTTCCACTAAAATCTCCGTTGGTGTCTTATTTTTCAAGGGCAATCCTGAATGTGACTCAAGATGAAGAAAAATTCGATAGGATTAGGAGCAGGTACTTCTCCAGCAGAATCATATCTGAAGATGAAAGTGAATCATCAATTCCAAACAGTGAAAAGAGTCTTACATTGTCAAGCTTTGGAGGGCTCTTCATCATCACAGGGGTCACTTCTGGGATTTCACTTGTCTTCAATTTGTTCAAGTTTGGCTACTCTGATCAGTCAGAAGAAAGGTGTCTTTGGTTGTCGCAGTTAAAGGCTCGAATAGTGAAGTGCTTATTGGATCGAAAGAATAGCTCTTTATCTTTTAATAGAGGCGATTCCAGATTATACTCTACGAGTAATATTGTAGAAGAAGATAAAGCCATTACTGCCCAGAATGAACAAGAACAGCTACGTTCTCCAGAGCATAGTGAAGCCATTCAACATGAGCATCAGTCATCATAG 2343 0.4127 MTMSSLRKKKSFNLCIWLRCFCTTFLLWFFIEPSKAKKEAKIPVGVVVDLNSSIGIMVMRCIQMAHQDFYKHYSHYQTRLDLRIRDSQNDVVTAASAAFDLMRKEKVHAIIGPSFSEQARFVIQLGQKYLVPIVLFSATSPSLPPIRSKYFVRTAQDDRSQVKAIAAIVEAYGWHEIIPIYEDTEYGNGLIPYLTDALEDVNTRVPYRIAIDINSEESKILEKLKELNQNRKRIFLVHMTSLVGPKFFSAVNKAGMMREGYGWIVSDGLSNTLEPLGPKVMDSMQGVLGVRPKVEKSRKLTSFRNKWKALSIKPPLTLFGLWAYDTVWAIAMAVESTFADSKGNETLIDRILDTKFEGLSGDFNLSEGHLKPLELEVFNVVGRKERVIGRWSPERGLFHEKLKRGLFHEKLRAPIWPGDTTNQPTKLRIGVPVRKRFVEFLKVEKRSSNSTPDVSGFTIDVFLEVVKALPFPLPYEFIPFQKKTGESTSYEELVLQIEKKASFPFKDKNPGTLSICPSSMLTVQRLQPKFMDVKEIKKNNYCVGHQKGSFVKKILINQLGFRESKLKPYERPEEYDRALSSGEIAAFFDEIPYLKLYLSKYGSKYAMVGPTYKTAGFGFAFPLKSPLVSYFSRAILNVTQDEEKFDRIRSRYFSSRIISEDESESSIPNSEKSLTLSSFGGLFIITGVTSGISLVFNLFKFGYSDQSEERCLWLSQLKARIVKCLLDRKNSSLSFNRGDSRLYSTSNIVEEDKAITAQNEQEQLRSPEHSEAIQHEHQSS 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0943 780 Gene3D - 522 615 - -
Lele19g0943 780 Pfam Bacterial extracellular solute-binding proteins, family 3 530 654 IPR001638 -
Lele19g0943 780 Gene3D - 420 504 - -
Lele19g0943 780 SUPERFAMILY Periplasmic binding protein-like I 40 392 IPR028082 -
Lele19g0943 780 SMART GluR_14 426 655 IPR001320 GO:0015276|GO:0016020
Lele19g0943 780 Gene3D - 164 324 - -
Lele19g0943 780 CDD PBP1_GABAb_receptor_plant 44 398 IPR044440 -
Lele19g0943 780 MobiDBLite consensus disorder prediction 764 780 - -
Lele19g0943 780 PIRSF IGluLR_plant 515 780 IPR017103 -
Lele19g0943 780 PIRSF IGluLR_plant 12 503 IPR017103 -
Lele19g0943 780 MobiDBLite consensus disorder prediction 754 780 - -
Lele19g0943 780 PANTHER OS06G0188250 PROTEIN 20 376 - -
Lele19g0943 780 SUPERFAMILY Periplasmic binding protein-like II 421 654 - -
Lele19g0943 780 Pfam Receptor family ligand binding region 59 381 IPR001828 -
Lele19g0943 780 FunFam Glutamate receptor 157 312 - -
Lele19g0943 780 Gene3D - 70 163 - -
Lele19g0943 780 CDD GluR_Plant 426 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0943 Lele-ChrLele19 5775231 5778384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0943 518 713 Ion Channels AT5G27100 32.692 1.76e-21 98.2