Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0906 ATGTTTCTGTTTTTCTGTCTCGTCATTTTTCGCTTTGGTGGGGTTTATGGTGGGGAAGAAAGTGCCCGCCAAGTGAATGATGGTAGTTCACTGAGAGATTTCATGTCGGGAATTGTTTCAGACCCAGAAAACTCTCTAGCTAGTTGGAGATCTCCTGGTGTTCTGTTTTGTAATTGGTCAGGAATTGTTTGTAACAATGTGAGTGGGAAAATTACAGAGATTCATCTTGGAAGGAGGTCACTAGGGGGTACGATTTCCCCTTCTCTTGGTAACCTCTCTTCTTTGAAAGTTCTTGATCTTTCTGAAAACTTTTTTGTGGGTCATATCCCAAAAGAGTTGGGGCGTTTAGTTCAGCTAGAAAACCTCACTTTGTATTGGAATCTTCTAGAAGGGAAAATCCCAACAGAGCTGGGTTCACTTCACAACTTACAGTTTTTAGACCTAGGAAGTAATAGGCTTGAGGGTGTGATTCCATCTTCATTGTTCTGCAATTTTTCGTCCTCATTGACAGATTTAGACCTCTCTAACAATTCATTAGTTGGCCAAATTCCCTTGAACAACGAGTGTGTGCTTTATGAGCTTCAGTATCTTTTACTTTGGTCTAACCAGCTTGAGGGACTAGTTCCTCTAGCTCTTTCAAACTCCACAAAACTCAAATGGCTTGATTTGGGATCAAACAGGTTTAGTGGTGAGCTACCATCAAAGATTGTCGGGAATTGGCCGTATTTACAACTTCTCTACTTACCATACAATGGCTTTGTTGGCCATGATGGTAATACCAATCTTGAACCATTCTTTGCTTCCTTAGTGAATATGTCTAACCTTCAAGTGCTTGAATTAAATGGAAACTCTCTTGGAGGGAAGCTACCTCATATAATTGGAGATCTTCCAACATCATTGAAGCAACTTCATCTTGAGGACAACCTCATATATGGTTCCATTCCCTCAGACATTGCCAACCTTTTCAATCTAACTCTTTTAAACTTGTCCAGTAACCAACTAAATGGATCAATCCCTCCAAACCTTTCTCTGATGAGTAAGCTTGAGAGAGTTTTTTTGTCCAATAATTCATTATCTGGTGAGATTCCTTCAACCCTTGGTTACATTCAGCATCTGGGTCTTCTAGATTTGTCAAGAAACAAGCTTTCTGGTTTAATACCAGATAATCTTGCCAATCTTTCCCAGTTAAGAAGGCTTTTACTTTATGATAACCAGCTTTGTGGAACGATACCACCAAGCCTCGGAAAATGTGTCAATTTGGAGATTTTAGACCTATCTCACAACAAGATTTCAGGGGTGATTCCTACAGGAGTTGCAGCCTTAACTAGTTTGAAAATATACTTGAATTTGTCAAGCAATAACTTGGATGGTCCTCTGCCATTAGAGCTAAGCAAAATGGACATGGTTCTAGCTATCGATTTATCTATGAACAACCTCTCTGGTAGAATCCCACCACAGCTTGAAAGTTGCATAGCACTTGAGTACCTTAACCTTTCGGGTAATTCTTTAGAAGGCCCTCTTCCATATTCTTTAGGCCAATTGTTTTACATTCGAGCACTAGACGTGTCTTGGAATCAATTGACTGGGGAAATACCGCAATCCCTGAAGTTATCTTCTTCTCTCAAAGAACTCAATTTCTCTTTTAATAATTTCTCAGGGAGCGTATCGATGGAAGGAGCATTTTCATCACTCTCCATAGACTCTTTCCTAGGAAATGATGGCCTTTGTGGCTCAGTTAAAGGCTTGCCTAGTTGCCATAAGAGACGTAGTCATCATTTGATTCTCTTGTTAATTCTGGTGTTACTCTTTGGCACCCCCATGTTCTACATGGTTGGGCTCAATTCGAGAGTCCGAAAGAGACTAGCCATTGCTAGCATGGGAAACTCGGAACTTGAGGAAGAAAGAAAAGAGCTCTATTACCCAAGAATTTCACATAAACAACTTATTGAAGCAACTGGGGGCTTCAATGCTTCAAACTTGATTGGTTCAGGTCGGTTTGGAAAGGTCTATAAGGGAGTCCTCCAAGACAGTACAAGAATAGCAGTGAAAGTGTTAACTGCTACCACTGCTGCTGATATTTCAGGGAGCTTTAGAAGGGAATGTCAGATCCTAAAGAAGACAAGGCACAGAAACTTAATAAAGATCGTCAAGATTTGTAGTAAGCCAGAGTTTAAGGCTCTTGTTCTTCCACTAATGCCAAATGGTAGCCTCGAGAGGCACCTATATCCAAGCAGTGGTTTGAGCCAGAGGTTGGATTTGGTTCAGTTAGTGAAGATCTGCAGTGATGTAGCTGAGGGAATGGCTTATCTCCATCATTACTCTCCAGATAAAGTGGTTCACTGTGATCTTAAGCCAAGTAATATACTTCTTGATGAAGATATGACAGCTCTGGTGACAGATTTTGGAATTTCAAAGCTAGTTAAATGTAATGAAAGCAGCCCCTCCAATAACTCAACATCTTTCAGTTCAACTCAAGGCTTGCTATTGGGATCTATTGGCTACATAGCCCCTGAGTATGGAATGGGAAAACATGCCTCAACTGAAGGTGATGTCTACAGTTTTGGAGTACTTCTGCTGGAAATTGTAACAGGCAGGCCCCCTACAGATGTCCTTATCCATGAAGGTTCTAACTTGCATGAATGGGTTAAGAGACAGTATCCACATAAGCTTGAAGCCATAGTGGAACAAGCATTGGAAAGGTACTTCCCTTTAAGCCACCCTCCGGTGCAACATAACAAAATCTGGCAAGATGTTATCATGGAACTCATAGAGCTGGGCCTTATTTGCACACAGAACAATCCTTCAATGAGACCAAGCATGCTTGATGTAGCTCAAGAACTTGGGAGGTTGAAAGACTACTTGTCTAATCCATCACTTCATATGACTGAAGAAGCCAATTGCAAGAATGATAACCTTTCTACTGTGAAGATTACTCAATAA 2940 0.4082 MFLFFCLVIFRFGGVYGGEESARQVNDGSSLRDFMSGIVSDPENSLASWRSPGVLFCNWSGIVCNNVSGKITEIHLGRRSLGGTISPSLGNLSSLKVLDLSENFFVGHIPKELGRLVQLENLTLYWNLLEGKIPTELGSLHNLQFLDLGSNRLEGVIPSSLFCNFSSSLTDLDLSNNSLVGQIPLNNECVLYELQYLLLWSNQLEGLVPLALSNSTKLKWLDLGSNRFSGELPSKIVGNWPYLQLLYLPYNGFVGHDGNTNLEPFFASLVNMSNLQVLELNGNSLGGKLPHIIGDLPTSLKQLHLEDNLIYGSIPSDIANLFNLTLLNLSSNQLNGSIPPNLSLMSKLERVFLSNNSLSGEIPSTLGYIQHLGLLDLSRNKLSGLIPDNLANLSQLRRLLLYDNQLCGTIPPSLGKCVNLEILDLSHNKISGVIPTGVAALTSLKIYLNLSSNNLDGPLPLELSKMDMVLAIDLSMNNLSGRIPPQLESCIALEYLNLSGNSLEGPLPYSLGQLFYIRALDVSWNQLTGEIPQSLKLSSSLKELNFSFNNFSGSVSMEGAFSSLSIDSFLGNDGLCGSVKGLPSCHKRRSHHLILLLILVLLFGTPMFYMVGLNSRVRKRLAIASMGNSELEEERKELYYPRISHKQLIEATGGFNASNLIGSGRFGKVYKGVLQDSTRIAVKVLTATTAADISGSFRRECQILKKTRHRNLIKIVKICSKPEFKALVLPLMPNGSLERHLYPSSGLSQRLDLVQLVKICSDVAEGMAYLHHYSPDKVVHCDLKPSNILLDEDMTALVTDFGISKLVKCNESSPSNNSTSFSSTQGLLLGSIGYIAPEYGMGKHASTEGDVYSFGVLLLEIVTGRPPTDVLIHEGSNLHEWVKRQYPHKLEAIVEQALERYFPLSHPPVQHNKIWQDVIMELIELGLICTQNNPSMRPSMLDVAQELGRLKDYLSNPSLHMTEEANCKNDNLSTVKITQ 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0906 979 Pfam Leucine Rich Repeat 493 512 IPR001611 GO:0005515
Lele19g0906 979 Pfam Leucine Rich Repeat 142 162 IPR001611 GO:0005515
Lele19g0906 979 ProSitePatterns Serine/Threonine protein kinases active-site signature. 778 790 IPR008271 GO:0004672|GO:0006468
Lele19g0906 979 SMART LRR_typ_2 321 345 IPR003591 -
Lele19g0906 979 SMART LRR_typ_2 191 214 IPR003591 -
Lele19g0906 979 SMART LRR_typ_2 140 164 IPR003591 -
Lele19g0906 979 SMART LRR_typ_2 272 296 IPR003591 -
Lele19g0906 979 SMART LRR_typ_2 418 441 IPR003591 -
Lele19g0906 979 SMART LRR_typ_2 393 417 IPR003591 -
Lele19g0906 979 SMART LRR_typ_2 92 116 IPR003591 -
Lele19g0906 979 SMART LRR_typ_2 369 392 IPR003591 -
Lele19g0906 979 PRINTS Leucine-rich repeat signature 372 385 - -
Lele19g0906 979 PRINTS Leucine-rich repeat signature 417 430 - -
Lele19g0906 979 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Lele19g0906 979 SUPERFAMILY L domain-like 36 256 - -
Lele19g0906 979 Gene3D Phosphorylase Kinase; domain 1 627 730 - -
Lele19g0906 979 SMART LRR_sd22_2 417 435 - -
Lele19g0906 979 SMART LRR_sd22_2 272 298 - -
Lele19g0906 979 SMART LRR_sd22_2 140 167 - -
Lele19g0906 979 Gene3D Transferase(Phosphotransferase) domain 1 732 974 - -
Lele19g0906 979 SUPERFAMILY Protein kinase-like (PK-like) 637 947 IPR011009 -
Lele19g0906 979 ProSitePatterns Protein kinases ATP-binding region signature. 661 683 IPR017441 GO:0005524
Lele19g0906 979 Pfam Leucine rich repeat 347 406 IPR001611 GO:0005515
Lele19g0906 979 Pfam Leucine Rich repeat 417 432 IPR001611 GO:0005515
Lele19g0906 979 Pfam Leucine Rich repeat 516 530 IPR001611 GO:0005515
Lele19g0906 979 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 369 589 - -
Lele19g0906 979 CDD STKc_IRAK 661 950 - -
Lele19g0906 979 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 732 959 - -
Lele19g0906 979 SUPERFAMILY L domain-like 268 568 - -
Lele19g0906 979 ProSiteProfiles Leucine-rich repeat profile. 323 345 IPR001611 GO:0005515
Lele19g0906 979 SMART serkin_6 655 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele19g0906 979 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 352 947 - -
Lele19g0906 979 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 60 257 - -
Lele19g0906 979 Gene3D Ribonuclease Inhibitor 26 188 IPR032675 -
Lele19g0906 979 ProSiteProfiles Protein kinase domain profile. 655 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele19g0906 979 FunFam Leucine-rich repeat receptor protein kinase EMS1 265 364 - -
Lele19g0906 979 ProSiteProfiles Leucine-rich repeat profile. 419 442 IPR001611 GO:0005515
Lele19g0906 979 Pfam Protein kinase domain 657 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele19g0906 979 Gene3D Ribonuclease Inhibitor 189 589 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0906 Lele-ChrLele19 5495107 5498310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0906 27 952 Receptor kinase-like Gene Family AT3G47570 35.569 2.06e-159 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Lele19g0906 Pkinase 1.8e-43 CL0016