Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0887 ATGTTTGCAGCATTTACTGTTCTCTCTCCCCCTCTCTTTTCTTCCCACAAGGATAACGTGAGCCTCCCAGAGATTCCGCTGTCAGAACTTTCTGATTCACTTCCTCTGATCTTGCTATTCCTTTCTATCGCACTTACCAAAAGATCGCGTATTTCTCTTCAAGGTTGTATATATCAACTTTCAAAGATGTTTGACTGTGGTTACAAGTCACAATACATGAGCGGCCAGCGGGAAAACTTTGTGAGGTTGGATGACTTGGACTCGAGACTATCTTCATCTTCTGATGCTGAACATAATAATAGATTTCTATTTGGTACTGCTAAATTAAGCCGTGGCGGTTATGCTCGCATTGGAACCACTGGATCTTTCAAAAGAGGAATGAGAAAGGGATCTGCAGGACTGAAGTCAATCGGCCGATCGCTTGGATTTGGGGTATCAAGGGCAGTCTTCCCGGAAGACCTTAAAGTGTCAGAGAAGAAGATATTTGATCCTCAAGACAAATTCTTACTCTTGTGGAATAAGCTTTTTGTAATCTCATGCATTTTGGCTGTCTCTATTGATCCCTTGTTTTTTTATCTCCCTGTGATCAATGATTCAGTGAACTGTCTTGGTATAGATCATAAAATGGCAATCATAGTCAGCACTCTGAGGACAGTCATCGATGCTTTCTACCTTATACATTGTAGTTTGGAGATTTCTTCAGAGGTTAAAAAACTCGGATGTATTAGCAAAAAGGAGGCCTTACTGTTCATTATCTTGCTTCAGTATGTTCCTAGATTGCTTCGGATGGTACCGTTGACTTCAGAACTCAAGAGAACAGCTGGTGTCTTCGCCGAAACTGCATGGGCTGGAGCTGCATATTATTTGCTATTATACATGCTAGCTAGTCATGTAGTTGGGGCTTCTTGGTACTTGTTAGCTCTTGAACGCAACGACGCATGCTGGCAGAAGGCTTGTAGTGAAAATGGATGTAACAAAAATTTCTTGTCTTGTGGAAACCAGCACTTGGAAGGTTATAGTGCCTGGCAGAATAGAAGCAGAGATATTTTCAATTCACAATCCTCTGTGGATACTGAAAATCCCCCTTTTGATTATGGAATTTTTACCCAAGCATTTTCATCTGGGATTGTTTCATCTAAAACTTTCATCTCTAAATACTGCTGCTGTTTATGGTGGGGGCCCCAGAATGAGACATACCTTCAGTCTCTTACCATTAGGCTCGAGGAAATGAGAGTCAAAAGACGCGATTCGGAACAGTGGATGCATCATCGCCTGCTCCCCCACGAGCTTGGGGCACGTGTCAGACGCTATGATCAATATAAGTGGTTGGCAACACGCGGCGTTCCATTATTTGAGAGTATGGATGAGAGATTACTTGATGCAATTTGTGAGAGACTGAAACCGTGTTTATTTACAGAGAATACTTGCATTGTTCTTGAAGGAGATCCGGTTGATGAGATGCTTTTTATCATCCGTGGTCGCCTCGAGAGTGTTACAACCGATGGCGGGAGAAGTGGTTTTTTTAACCGTACTTTCCTAAAAGAGACAGACTTTTGCGGCGAGGAGCTTTTAACTTGGGCCTTGGATCCCAAGTCAGGTTCCGACCTTCCATCTTCTACAAGAACTGTTAAGACACTTGCAGAGGTTGAGGCTTTTGCACTGATTTCTGAAGATTTAAAGTTTGTTGCTAGTCAATTTAGGCGCCTCCATAGTAGGCAGGTTCCACACACATTCCGGTTTTACTCACAACAATGGAGAACTTGGGCTGCTTGCTTTATTCAAGCAGCATGGCGTCGTTATTGCAAGAGGAAGTTTATGGAGCTTCGTCGAAAAGAAGAATCTGAGGAATCAGAAGGAGGAGCTCGCAACAATGCCGGTGGTGGTGGTTCATACAGCATTCGTGCAACCTTCTTAGCCTCAAGATTTGCAGCCAATGCTCTTCGCGGTATACATCGCAATAGGAATGCCAAGATTGCCAGGGAATTGGTTAAACTACAGAAGCCACCGGAGCCTGACTTTACTGCAGATGAATGA 2034 0.4331 MFAAFTVLSPPLFSSHKDNVSLPEIPLSELSDSLPLILLFLSIALTKRSRISLQGCIYQLSKMFDCGYKSQYMSGQRENFVRLDDLDSRLSSSSDAEHNNRFLFGTAKLSRGGYARIGTTGSFKRGMRKGSAGLKSIGRSLGFGVSRAVFPEDLKVSEKKIFDPQDKFLLLWNKLFVISCILAVSIDPLFFYLPVINDSVNCLGIDHKMAIIVSTLRTVIDAFYLIHCSLEISSEVKKLGCISKKEALLFIILLQYVPRLLRMVPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHVVGASWYLLALERNDACWQKACSENGCNKNFLSCGNQHLEGYSAWQNRSRDIFNSQSSVDTENPPFDYGIFTQAFSSGIVSSKTFISKYCCCLWWGPQNETYLQSLTIRLEEMRVKRRDSEQWMHHRLLPHELGARVRRYDQYKWLATRGVPLFESMDERLLDAICERLKPCLFTENTCIVLEGDPVDEMLFIIRGRLESVTTDGGRSGFFNRTFLKETDFCGEELLTWALDPKSGSDLPSSTRTVKTLAEVEAFALISEDLKFVASQFRRLHSRQVPHTFRFYSQQWRTWAACFIQAAWRRYCKRKFMELRRKEESEESEGGARNNAGGGGSYSIRATFLASRFAANALRGIHRNRNAKIARELVKLQKPPEPDFTADE 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0887 677 SUPERFAMILY cAMP-binding domain-like 446 568 IPR018490 -
Lele19g0887 677 SMART cnmp_10 450 581 IPR000595 -
Lele19g0887 677 SUPERFAMILY Voltage-gated potassium channels 163 393 - -
Lele19g0887 677 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 153 232 - -
Lele19g0887 677 ProSiteProfiles IQ motif profile. 586 615 IPR000048 GO:0005515
Lele19g0887 677 ProSiteProfiles cAMP/cGMP binding motif profile. 450 534 IPR000595 -
Lele19g0887 677 CDD CAP_ED 450 581 IPR000595 -
Lele19g0887 677 FunFam Cyclic nucleotide-gated ion channel 1 448 566 - -
Lele19g0887 677 Gene3D Jelly Rolls 448 568 IPR014710 -
Lele19g0887 677 Pfam Ion transport protein 172 392 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0887 Lele-ChrLele19 5386750 5391421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0887 63 677 Ion Channels AT2G23980 59.572 0.0 830