LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele19g0881	ATGCCGCTTCACAGTCACACATCGGACCCTATAAAAAGGCTTTCCTCTCTCTTCCGAACCATCCCTTTTACGGCCATGCCTGAGCATCACGCTCTCCGGCCTCCTCCAATTCCAACCCTTGATCGTCGCCCTGTTGAACCAGAGGATAAACCACAAGGTCCTGATATAAATGAAGGACAACATGATGACGACGATGATGCGGAGAAGGAACACCGGAAACGAGTCTGTGAAGAACCGTCTTGCGAGTTGCGGAATTGCAAACCTTCGGATGAGGAGGCAGACCCGCGAGAATCTACTTCTGAAACCCTAGTTATGCCCTCTTCGGTTGAATCGGTGGTGGCTAGTAAGAGTGCTGATTTACAGGCTAGCTCTCCTACGCGGGCTGATGGCAGAGATGAAAGTGAGGAGCCAAATGGACCTTCAAACATGGAAATTGTTGTAAGAGAAACAGTCCAGGGAGCTCAGAATCAGACAGAAGATCGAGTCGAGGTGTCTGTATGTCCAACTCTGTTGTCTGTCGTATCGCCATCTTCTGTTACACCATCTTTATCATATGTTCCTAGTTCAACTGTACCAGAGCAAAGACTGTCTCCTCAGAATGTTAATAATGTGCATGTGCTGGGAGCAGGCAAGACAAATTCTTCTGGTGGTAAACCTTTATCTGCTGTTAATGTTGCCAGGGCATCTGCATCTGATGGATACAACTGGCGCAAGTATGGTCAGAAGCAAGTGAAGAGTCCAACTGGTTTTCGAAGCTATTACAGGTGTGCTCATTCAGGGTGTAGTGCGAAGAAGATTGAATTTTGCGATCAATCAGGGCGTATGATAGAGATTATTTATAAAGGTCAACACAGCCATGAGCCACTACGGAAGACTAACACCACTGGGGAAATTAAGTTTATGCCATCTGACGAACCTACTGTGGAAGCCAATATTCCAGAACAGCCCATTGGAGTGCCCAAGGACGCAAATCCAACCTCTTCTACAAAAGAACCTCTACGAGATTTACCATACAGTGCTGATAAGAAAAGGCAAAATTCATCTGGTCTTAGTGAGAATGGCAAATTTATTTTGAAGGTGGAGCATGTTGATGAACCAGAGTTGAAAAGAAGAGTGAAGAATGGTGACTTAACAAACTTGGACTCGCATGTGGAACCTGGAAAGAAATCTAAGTATGTTGTACATGCAGCAGGGGATGTCGGGATATCAGGTGATGGATACAGATGGCGCAAGTATGGACAGAAAATGGTCAGGGGAAATTCCCATCCCAGAAATTACTACCGATGCACGTCTTCTGGTTGTCCTGTCCGTAAGCAAATTGAGGCTGCAGTAGATGATCCTAATGCTGTCATCGTCACATATAAAGGAGCACATAACCATGACAAGCCTGTGCCCAAGAAACGGCATGGCCCACCGAGAGCTCCTCTTGTGCCTGCTACTGCCCCTGCCTCGTCAAACAATTTGCAACTCGTGAGTAGCGATTCACAGCAAAACCGAGAAAATTCTGCTCAGTGGTCGGCGGACTCTGAAGAAGAATTAACCGAAGATGCCTCCGACCTTGGGGGTGAGAAAGCAATCGAATCAGCTAGAACTCTTTTAAGCATGGGTGAAATTAAGCCTTGTTGA	1626	0.4649	MPLHSHTSDPIKRLSSLFRTIPFTAMPEHHALRPPPIPTLDRRPVEPEDKPQGPDINEGQHDDDDDAEKEHRKRVCEEPSCELRNCKPSDEEADPRESTSETLVMPSSVESVVASKSADLQASSPTRADGRDESEEPNGPSNMEIVVRETVQGAQNQTEDRVEVSVCPTLLSVVSPSSVTPSLSYVPSSTVPEQRLSPQNVNNVHVLGAGKTNSSGGKPLSAVNVARASASDGYNWRKYGQKQVKSPTGFRSYYRCAHSGCSAKKIEFCDQSGRMIEIIYKGQHSHEPLRKTNTTGEIKFMPSDEPTVEANIPEQPIGVPKDANPTSSTKEPLRDLPYSADKKRQNSSGLSENGKFILKVEHVDEPELKRRVKNGDLTNLDSHVEPGKKSKYVVHAAGDVGISGDGYRWRKYGQKMVRGNSHPRNYYRCTSSGCPVRKQIEAAVDDPNAVIVTYKGAHNHDKPVPKKRHGPPRAPLVPATAPASSNNLQLVSSDSQQNRENSAQWSADSEEELTEDASDLGGEKAIESARTLLSMGEIKPC	541

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele19g0881	541	MobiDBLite	consensus disorder prediction	456	522	-	-
	Lele19g0881	541	MobiDBLite	consensus disorder prediction	100	124	-	-
	Lele19g0881	541	Pfam	WRKY DNA -binding domain	405	460	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele19g0881	541	Pfam	WRKY DNA -binding domain	232	287	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele19g0881	541	SMART	WRKY_cls	230	288	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele19g0881	541	SMART	WRKY_cls	403	462	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele19g0881	541	SUPERFAMILY	WRKY DNA-binding domain	228	287	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele19g0881	541	MobiDBLite	consensus disorder prediction	310	350	-	-
	Lele19g0881	541	Gene3D	WRKY domain	220	289	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele19g0881	541	Gene3D	WRKY domain	388	464	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele19g0881	541	MobiDBLite	consensus disorder prediction	480	508	-	-
	Lele19g0881	541	MobiDBLite	consensus disorder prediction	42	98	-	-
	Lele19g0881	541	ProSiteProfiles	WRKY domain profile.	398	463	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele19g0881	541	SUPERFAMILY	WRKY DNA-binding domain	399	463	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele19g0881	541	MobiDBLite	consensus disorder prediction	27	144	-	-
	Lele19g0881	541	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	199	498	IPR044810	GO:0003700
	Lele19g0881	541	ProSiteProfiles	WRKY domain profile.	225	289	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele19g0881	541	FunFam	WRKY transcription factor	389	464	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele19g0881	Lele-ChrLele19	5355757	5359026	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele19g0881	134	541	WRKY Transcription Factor Family	AT4G30935	48.687	2.33e-112	340

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Lele19g0881		WRKY	1.8e-24	CL0274