Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0879 ATGAGTTTATCATCATCGTCGTCATCGTCTTCATCTTCCTCAAAAGCCTTCAACCTCTCTGCTTCTGTTTGTTCATGGCCTGGTGTTTCCTGTGATGCCAATAAAGAACATGTTGTTGAGTTGAAAGCTTCTGGTATGGGACTCTCTGGGCCTATTGCTGATAACACCATTGGCAAACTCGGCAAGCTACAAATTTTGGATCTTAGTAACAACAAAATCACTGCTTTGCCTTCTGATTTCTGGAGTTTAAGCTCTTTGAAGATTCTTAACCTCTCCTCCAATCAGATATCAGGCTCACTTGCCAGCAACTTTGGCAACTTTGGTCTCCTCGAAACCTTTGACATGTCCTGCAACGATTTTTCTGGGGAAATTCCTGAAGCTATTAGCTCCCTTGTGAGTTTAAGGATCCTTAAACTTGACAAAAACAAGTTTGAGCGTAACATACCTTCTGGGATTCTACAGTGTCAGTCTCTAGTTTCTTTTGATCTTTCACTAAATCAGCTTAATGGCACTCTTCCAGAAGGTTTTGGAGCTGCTTTTCCTAAACTTGAAAGCTTGAACCTTGCTGGGAACAATCTTCAGGGTCATGATTCAGATTTTTCAGGGTTGAAATCCATTACTAGTATTAACATATCTGCAAATTCCTTTCAGGGTTCTTTTTTGGGTATGTTTCAGGAACAGTTGGAGGTAATTGACCTTAGCAGGAACCAGTTTGATAGTCAGATTTCGCAGGTAAAGTTCAAGTACAATTGGTCTCATTTGGTTTATCTGGATTTGTCTGAGAATAGACTCAGTGGGGAAATTTTCCAGTATCTGAATGAATCCCAGAATCTTAAACACCTTAATCTGGCACACAATAGGTTTGCAAGTCAGAAATTTCCACAAATTGAAAAGTTCTCAAGGTTGGAATATCTGAACTTGTCCAAAGCTAATCTGCATGGCCACATTCCTGCGGAAATATCACAGCTGAGTAATTTGAGTTCACTTGATGTTTCTTTGAATAATCTTATTGGGGGAATTCCATTTCAAAGAAGTGAAAACCTCCAAATTCTTGACCTTTCATACAACAATTTGAGTGGTGAAATCCCTCAAGCTGTGTTGGAGAAGCTCCCATCAATGGAGAAATATAACTTCTCTTATAATAACTTAACCTTCTGTTCTTTGGGAATCAACCCCAAGATCCTCAAAACAGCATTCTATGGATCATCAGACAATTGCCCGATTGCTGCGAATCCGAAGCTTTTCAAAAGAACCGATGAGCAACGAAAGGGGATGAAACTAGCTCTGGCATTGACCCTCTCAATGATGGTCTGCTTACTTTCTGGCCTTTTATTTCTAGCATTTGGTTGCAGAAGGAAAACAAAATCATGGGCAATTAAGCAAACTTCCTACAAAGAAGAGCGGAACATTTCGGGTCCCTTCTCATTCCAGACTGATTCAACTACCTGGGTGGCTGATGTCAAGCAAGCAAACTCAGTCCCAGTAGTAATCTTTGAGAAGCCATTACTCAACATTACATTTTCAGATCTCTTGCACTCGACTTCAAATTTCGATCGGGGCACCCTCTTTGCTGAAGGCAAATTTGGGCCTGTTTACCGAGGTTTTCTGCCTAGTGGCATTCATGTGGCAGTTAAAGTTTTGGTTGTTGGTTCTACATTGACAGAACAAGAAGCTGCTAAAGAGCTCGAGTATCTTGGTCGAATCAAGCACCCTAATCTTGTTCCCCTAAGTGGATACTGCTTTGCTGGGGATCAGAGGATTGCCATATATGATTACATGGAGAATGGGAACTTGCAAAACTTTCTTCATGACTTGCCATTTGGAGTACAGAAGACAGATGATTGGAGCAGAGACACATTGGAAGAAGGAGATGACATGAATAATGGAATTCACAATGCTAGCTCTGAGGGATTATCACTCTCATCTTGGAGATTTAGGCACAAAATCGCCCTTGGCACGGCTCGAGCATTGGCATTTCTTCACCATGGCTGCTCACCTCCAATCATTCACAGAGATGTTAAAGCTAGCAGTGTCTACTTGGACTATAACTTGGAGCCAAGGTTGTCAGATTTTGGTCTGGCCAAGATGTTTGGCAGCAGCTTGGATGATGAGATTGCTCGAAGCTCTCCCGGCTATGTCCCACCCGAGTTTTCTCAACCCAAATATGACCTTCCAACACCCAAATCCGATGTTTACTGTTTTGGGGTTGTTCTCTTTGAGCTAATAACAGGAAAGAAACCAGTTGAGGATGATTATCCTGAAGAGAAAGAAGGGACTTTGGTAAGGTGGGTCAGAGCACTGGTAAGAAAGAACTTAGCTTCAAGAGCTATTGATCCAAAAATTAGTCATAGAGGAATTGATGATCAAATTGAAGAAGCCCTTAAGATTGGTTATCTCTGTACTGCTGATCTTCCCTCTAAGAGACCTAGCATGCAGCAGATAGTGGGACTTTTGAAAGATATTGAGCCTTCTGCTGGGGAAAAATCATAA 2490 0.4153 MSLSSSSSSSSSSSKAFNLSASVCSWPGVSCDANKEHVVELKASGMGLSGPIADNTIGKLGKLQILDLSNNKITALPSDFWSLSSLKILNLSSNQISGSLASNFGNFGLLETFDMSCNDFSGEIPEAISSLVSLRILKLDKNKFERNIPSGILQCQSLVSFDLSLNQLNGTLPEGFGAAFPKLESLNLAGNNLQGHDSDFSGLKSITSINISANSFQGSFLGMFQEQLEVIDLSRNQFDSQISQVKFKYNWSHLVYLDLSENRLSGEIFQYLNESQNLKHLNLAHNRFASQKFPQIEKFSRLEYLNLSKANLHGHIPAEISQLSNLSSLDVSLNNLIGGIPFQRSENLQILDLSYNNLSGEIPQAVLEKLPSMEKYNFSYNNLTFCSLGINPKILKTAFYGSSDNCPIAANPKLFKRTDEQRKGMKLALALTLSMMVCLLSGLLFLAFGCRRKTKSWAIKQTSYKEERNISGPFSFQTDSTTWVADVKQANSVPVVIFEKPLLNITFSDLLHSTSNFDRGTLFAEGKFGPVYRGFLPSGIHVAVKVLVVGSTLTEQEAAKELEYLGRIKHPNLVPLSGYCFAGDQRIAIYDYMENGNLQNFLHDLPFGVQKTDDWSRDTLEEGDDMNNGIHNASSEGLSLSSWRFRHKIALGTARALAFLHHGCSPPIIHRDVKASSVYLDYNLEPRLSDFGLAKMFGSSLDDEIARSSPGYVPPEFSQPKYDLPTPKSDVYCFGVVLFELITGKKPVEDDYPEEKEGTLVRWVRALVRKNLASRAIDPKISHRGIDDQIEEALKIGYLCTADLPSKRPSMQQIVGLLKDIEPSAGEKS 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0879 829 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 77 172 - -
Lele19g0879 829 SMART LRR_typ_2 346 369 IPR003591 -
Lele19g0879 829 SMART LRR_typ_2 180 202 IPR003591 -
Lele19g0879 829 SMART LRR_typ_2 131 155 IPR003591 -
Lele19g0879 829 SMART LRR_typ_2 299 323 IPR003591 -
Lele19g0879 829 SMART LRR_typ_2 83 106 IPR003591 -
Lele19g0879 829 SMART LRR_typ_2 60 82 IPR003591 -
Lele19g0879 829 Gene3D Ribonuclease Inhibitor 344 416 IPR032675 -
Lele19g0879 829 PRINTS Leucine-rich repeat signature 63 76 - -
Lele19g0879 829 PRINTS Leucine-rich repeat signature 83 96 - -
Lele19g0879 829 Pfam Leucine Rich Repeat 347 365 IPR001611 GO:0005515
Lele19g0879 829 SUPERFAMILY L domain-like 6 394 - -
Lele19g0879 829 Gene3D Ribonuclease Inhibitor 1 150 IPR032675 -
Lele19g0879 829 Pfam Leucine rich repeat 53 96 IPR001611 GO:0005515
Lele19g0879 829 Pfam Leucine rich repeat 157 215 IPR001611 GO:0005515
Lele19g0879 829 Gene3D Phosphorylase Kinase; domain 1 477 592 - -
Lele19g0879 829 SUPERFAMILY Protein kinase-like (PK-like) 493 818 IPR011009 -
Lele19g0879 829 ProSiteProfiles Leucine-rich repeat profile. 62 83 IPR001611 GO:0005515
Lele19g0879 829 FunFam Putative LRR receptor-like serine/threonine-protein kinase 478 592 - -
Lele19g0879 829 Gene3D Ribonuclease Inhibitor 248 343 IPR032675 -
Lele19g0879 829 Gene3D Ribonuclease Inhibitor 151 247 IPR032675 -
Lele19g0879 829 ProSiteProfiles Protein kinase domain profile. 517 825 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele19g0879 829 Pfam Protein tyrosine and serine/threonine kinase 523 816 IPR001245 GO:0004672|GO:0006468
Lele19g0879 829 FunFam Calmodulin-binding receptor kinase CaMRLK 226 342 - -
Lele19g0879 829 SMART serkin_6 517 825 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele19g0879 829 Gene3D Transferase(Phosphotransferase) domain 1 593 828 - -
Lele19g0879 829 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 227 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0879 Lele-ChrLele19 5346325 5348814 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0879 63 821 Receptor kinase-like Gene Family AT5G07280 31.807 1.60e-109 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Lele19g0879 PK_Tyr_Ser-Thr 3.6e-32 CL0016