Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0873 ATGTCCCGAGGTGTTGCCGCCGACTCTGGCTTGCTTCAGATGCCCTTGTCTCTGGGTAACGACGTCGTTGACGGTTCCTCCTCCAAATCTCACATTCCGGCCGGCGAGGGTATTTACAACGGGTTCGCTGGATCTACGCACGAAGCGCATCAAGCTTCCAACCCAACTCAACATTTCCATCATCCTCAGGGGCAGAATTATGGAGCAACCGGGCTGCCGGCAACGAACCAAGCCCCGACGAACGGAGCTCCGGCGCAGCCAAAGCAGAGGGTTAGGGCGCGGAGGGGTCAAGCGACGGACCCACACAGCATCGCTGAGAGGTTACGGAGGGAGAGAATTGCAGAGAGAATGAAGTCTCTGCAAGAACTGGTTCCCAATGCCAACAAGACGGACAAGGCTTCAATGCTGGATGAGATCATAGACTATGTCAAGTTCTTGCAGCTCCAAGTGAAGGTTCTGAGCATGAGCAGATTGGGCGGTGCTGCTGCTGTTGCTCCTCTTGTTGCTGAGGGAGGAGGTGACTGCATCCAAGCCGCCGCCGCTGGCAACTCCAACAACGGCAACCAAACGGCGTCGTCCTCCAACGACACCCTCGACATGACGGAGCACCAGGTGGCTAAGCTCATGGAGGAAGACATGGGCTCCGCCATGCAGTACCTTCAGGGGAAAGGTCTCTGCCTCATGCCCATCTCCCTCGCCACCGCTATCTCCACCGCCACGTGTCCCTCCCGGAACCCCTTGGTCCCTGCCGCCGCCAACAACCACCACCATGCCGTGGCGTCCAACGGAAACGGAGGGGAAGGGCCGTCCTCTCCGAGCATGTCGGTGCTGACCGTCCAGTCTGCAACGGCGGTTAACGACGGCGCCGTTAAAGACGCCGCCTCCGTTTCGAAGCCGTGA 900 0.5922 MSRGVAADSGLLQMPLSLGNDVVDGSSSKSHIPAGEGIYNGFAGSTHEAHQASNPTQHFHHPQGQNYGATGLPATNQAPTNGAPAQPKQRVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVAEGGGDCIQAAAAGNSNNGNQTASSSNDTLDMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCPSRNPLVPAAANNHHHAVASNGNGGEGPSSPSMSVLTVQSATAVNDGAVKDAASVSKP 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0873 299 SMART finulus 103 152 IPR011598 GO:0046983
Lele19g0873 299 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 45 236 - -
Lele19g0873 299 FunFam Transcription factor bHLH66 94 159 - -
Lele19g0873 299 MobiDBLite consensus disorder prediction 257 280 - -
Lele19g0873 299 Gene3D - 94 161 IPR036638 GO:0046983
Lele19g0873 299 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 97 146 IPR011598 GO:0046983
Lele19g0873 299 MobiDBLite consensus disorder prediction 46 84 - -
Lele19g0873 299 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 95 157 IPR036638 GO:0046983
Lele19g0873 299 MobiDBLite consensus disorder prediction 34 104 - -
Lele19g0873 299 Pfam Helix-loop-helix DNA-binding domain 102 147 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0873 Lele-ChrLele19 5294639 5296984 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0873 80 298 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 66.102 6.04e-97 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele19g0873 HLH 1e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0681 17 18679667 18683593 Lele19g0873 19 5294639 5296984 hybridization
Lele18g0843 18 5274953 5277318 Lele19g0873 19 5294639 5296984 hybridization