Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0854 ATGTCGGGCTGGGATGAGGGAGCCGTCTACTATAGCGACCAAGCTCACTCCTGGGACGACCGCGGAGGAGACGCTCCCACCTCGGCTGCCGACAACCACACGATCCTCCAGAAATTAAAGGAGTTCATACGAAACTTCGAGACCGACAAGAATGTGTTCCCTTACAGAGAAAGCCTTGTCCATAATCCTAAGTTTCTGGTTGTCGACTTGGAAGATCTTGATGCCTTTGATTCTGACCTGCCCGCCAAACTTCGCTCCAACCCGGCTGATTACCTTCCACTGGTTTTGGTTAGTTTGAAGACGAAAGTGGCCGGGGATACTGGGGTTATGGAAGACCCAGTGACTGGGGATGTGCAGATTTTGCTCACTTCCAAAGAGGATCCAGTGTCAATGAGATCCCTCGGGGCTCAATATATATCAAAGCTGGTTAAGATTGCGGGGATTACAATTGCTGCATCGAGGACTAAGGCGAAGGCAACTTATGTCACCTTAATATGTAAGAATTGCAAAAAGGGGAAGCAAGTTCCATGTCGGCCAGGACTTGGTGGGGCGATTGTCCCTCGTTCATGTGATCATATTCCTCAGCCAGGAGAAGAACCATGCCCAGTTGATCCATGGCTTGTGGTTCCTGATAAGAGCAAGTATGTTGACCAACAAACCTTAAAACTACAAGAAAACCCCGAGGATGTTCCAACTGGGGAGCTTCCCAGAAACATGCTTCTCTCTGTGGATCGTCATCTCGTTCAAACAGTGGTACCTGGCTCAAGATTGACAATCATAGGAATCTATAGTATCTATCAAACTTCCAATTCTTCTGCAGCCCAAAAAGGAGCTGTTGCAGTTAGGCAGCCTTACATTAGGGTTGTTGGAATGGAACAAGCAAATGAGGCCAGCTCTCGAGGTCCAGCTTCATTCACACAAGAGGAGATAGAAGAATTCAAAAAATTTGCTGCTGAACCTGATGCATACAAAAATATATGCACCAAGATTGCTCCCTCCATATTTGGTCATGATGATGTTAAAAAGGCGGTGGCTTGTCTTCTCTTTGGAGGGTCGAGAAAGAACTTACCTGATGGAGTGAAGTTAAGAGGTGATATCAACGTATTACTCCTTGGGGATCCATCAACCGCAAAGTCACAGTTTCTCAAGTTTGTTGAAAAGACTGCTCCTGTTGCTGTTTATACTTCGGGAAAAGGATCATCAGCCGCAGGTCTCACAGCTTCTCGAGAGTTCTATCTTGAAGGAGGTGCCATGGTCTTGGCAGATGGAGGTGTTGTCTGCATTGATGAGTTTGACAAGATGAGACCAGAGGATAGGGTTGCCATTCATGAAGCCATGGAACAGCAAACTATATCCATAGCGAAAGCAGGAATAACAACTGTTCTTAATTCAAGAACTTCTGTGCTTGCTGCCGCCAACCCTCCATCAGGACGTTATGATGATCTTAAGACTGCACAGGATAACATTGATCTGCAAACAACCATTCTTTCTAGGTTCGATTTAATCTTCATTGTGAAAGACATCAGAATGTATAGTCAAGACAAGATCATAGCTAGTCATATCATTAAGGTTCATGCATCAGCTAATACAACTACTGGTGAGAGTAGGGTTTCTAAAGACAACTGGCTCAAGAGGTATTTACAATATTGCCGCACTGAATGTCACCCTCGTCTGTCAGAATCTGCAGCAACATTACTACAGAACAATTATGTCAAAATCAGACAGGATATGAGGAGGCAGGCAAATGAAACTGGAGAAGCTGCTGCAATACCAATTACTGTAAGGCAGCTGGAAGCTATTGTTAGGCTGAGCGAGGCTCTTGCAAAAATGAAGCTATCTCATATTGCAACCGAGGAGAATGTGCAAGAGGCAATAAGGCTTTTTACCGTTTCTACAATGGATGCAGCTAAGTCTGGAATATCCCTACAAGTAAATCTCACACCAGAAATGGCAAATGAAATAAAGCAAGCAGAAACACAGATAAAGAGAAGAATTGGGATTGGAAACCATTTGTCAGAAAGAAGGTTGATTGATGATCTCGTTAGAATGGGATTGAATGACTCTATTGTGAGAAGAGCTCTAATAATCATGCACCAGAGAGACGAAATAGAGTACAAGAGGGAAAGACGTCTTATATTCAGGAAAGCATAA 2151 0.4426 MSGWDEGAVYYSDQAHSWDDRGGDAPTSAADNHTILQKLKEFIRNFETDKNVFPYRESLVHNPKFLVVDLEDLDAFDSDLPAKLRSNPADYLPLVLVSLKTKVAGDTGVMEDPVTGDVQILLTSKEDPVSMRSLGAQYISKLVKIAGITIAASRTKAKATYVTLICKNCKKGKQVPCRPGLGGAIVPRSCDHIPQPGEEPCPVDPWLVVPDKSKYVDQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTVVPGSRLTIIGIYSIYQTSNSSAAQKGAVAVRQPYIRVVGMEQANEASSRGPASFTQEEIEEFKKFAAEPDAYKNICTKIAPSIFGHDDVKKAVACLLFGGSRKNLPDGVKLRGDINVLLLGDPSTAKSQFLKFVEKTAPVAVYTSGKGSSAAGLTASREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRMYSQDKIIASHIIKVHASANTTTGESRVSKDNWLKRYLQYCRTECHPRLSESAATLLQNNYVKIRQDMRRQANETGEAAAIPITVRQLEAIVRLSEALAKMKLSHIATEENVQEAIRLFTVSTMDAAKSGISLQVNLTPEMANEIKQAETQIKRRIGIGNHLSERRLIDDLVRMGLNDSIVRRALIIMHQRDEIEYKRERRLIFRKA 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0854 716 CDD MCM5 325 631 - -
Lele19g0854 716 Pfam MCM P-loop domain 310 525 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele19g0854 716 Gene3D - 158 216 - -
Lele19g0854 716 ProSiteProfiles MCM family domain profile. 322 521 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele19g0854 716 FunFam DNA helicase 303 646 - -
Lele19g0854 716 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 32 672 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lele19g0854 716 Pfam MCM N-terminal domain 38 100 IPR027925 -
Lele19g0854 716 Gene3D - 131 266 IPR012340 -
Lele19g0854 716 Gene3D - 303 650 IPR027417 -
Lele19g0854 716 Pfam MCM AAA-lid domain 542 631 IPR041562 -
Lele19g0854 716 FunFam DNA helicase 30 111 - -
Lele19g0854 716 ProSitePatterns MCM family signature. 424 432 IPR018525 GO:0003677|GO:0005524|GO:0006260
Lele19g0854 716 SMART mcm 127 633 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lele19g0854 716 Pfam MCM OB domain 131 266 IPR033762 -
Lele19g0854 716 Gene3D - 30 111 - -
Lele19g0854 716 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 626 643 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Lele19g0854 716 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 158 170 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Lele19g0854 716 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 132 147 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Lele19g0854 716 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 282 294 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Lele19g0854 716 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 550 565 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Lele19g0854 716 PRINTS Mini-chromosome maintenance (MCM) protein family signature 416 430 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele19g0854 716 PRINTS Mini-chromosome maintenance (MCM) protein family signature 468 480 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele19g0854 716 PRINTS Mini-chromosome maintenance (MCM) protein family signature 495 503 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele19g0854 716 PRINTS Mini-chromosome maintenance (MCM) protein family signature 444 457 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele19g0854 716 PRINTS Mini-chromosome maintenance (MCM) protein family signature 363 378 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele19g0854 716 FunFam DNA helicase 158 216 - -
Lele19g0854 716 SUPERFAMILY Nucleic acid-binding proteins 39 288 IPR012340 -
Lele19g0854 716 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 632 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0854 Lele-ChrLele19 5175535 5180987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0854 1 716 Core DNA Replication Machinery Family AT2G07690 78.112 0.0 1164