Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0852 ATGGAGATTTTAAAATTTTTCTACTTCAATCTTCTTCTTGCCACTTTCTTCGTTTTCTTCTTCTTGGCTGTTTCTGCAATGGACTCTTATTCCGAGGCACTCCTGAGCCTGAAATCTGAACTTGTGGACGATGAAGACAGTTTACATGACTGGATGGTGGTGAACTCAACTGGGAAATCCAATAATGCTTGTTGTTCTTGGTCTGGAATCAAGTGTGATAATAACTCAAAAACTGTAACCTCCATAGACTTGTCCATGAAGAAACTGGGAGGTGTAATTTCAGGGAAGCAGTTCAGTGTCTTCACAAAGCTTGAATATCTCAACCTCAGCCACAATTTCTTCTCTGGGCAACTTCCTTTGGAAATTTTCAACCTCACCGGTTTACGAAGCTTGGATATAAGCAGAAACAACTTTTCTGGTCACTTCCCAGGTGGGATTTCCAGCCTTAAAAACTTGCTTGTACTTGATGCCTTTAGCAACAGCTTTTCTGGACCACTGCCTGCTGAACTTTCTGAACTTGAACATCTCAAGGTCCTTAATCTTGCTGGGAGTTACTTCAAAGGACCAATCCCATCTGAATATGGTTCCTTTAGAAGCCTTGAGTTTCTTCATCTTGCAGGAAATCTTCTCACTGGCAATCTACCTCCAGAACTGGGTAATCTCAAAACAGTAACCCACATGGAAATTGGCTACAATTCTTACCAGGGTTTCATTCCGTCTGAGTTAGGTAACATGAGTGAACTTGAGTATCTTGATATTGCTGGTGCAAATCTATCTGGTCCAATACCAAAGCAACTCTCAAATCTCACCAATTTACAGTCACTTTATCTGTTCAGAAACCAGCTCACAGGATCAATTCCAAGTGAGTTTAGCAAGATCAAGTCACTCACAGATTTAGATCTTTCTGATAATCTCATTTCTGGGCCCATTCCTGAAAGCTTCTCAGAGTTGGAGAACCTGAGGCTGCTCAGTCTTATGTACAATGACATGAATGGCACTGTTCCTGAAGGAATTGCAGAACTTTCAAACTTAGAAACTCTTCTTATTTGGAACAATTACTTCTCTGGGTCACTTCCACAGAGCTTGGGCAAGAACTCAAATCTCATGTGGGTGGATGTTTCCACAAACAATTTTGTAGGCAGTATACCCCCAGACATTTGTATGAGAGGAGTACTATATAAGCTGATTCTGTTTTCAAACAGATTCTCAGGCAGCCTCTCGCCATCTCTCTCAAATTGTTCTTCACTTGTTCGTGTTCGCTTGGAAGATAACTTGTTCACAGGGAATATCCCTTTGAAATTCAGACATCTTCCTGATATATCATATGTTGACCTATCCAGGAATAAATTTCTTGGTGGGATCCCCTCAGATATTTCCCAAGCTAACAAGCTTACTTATTTCAATGTCTCCAATAATCCACTGTTACGAGGCACCATCCCTGAAAAGACCTGGTCTTTGCCACTTCTGCAAAATTTTTCAGCCTCTGCCTGTGGTATTTCAGGAAATCTTCCCCCATTTGAGTCCTGCAGATCAGTCTCTAGCATTGAGCTTGATAGGAACAACTTGTTTGGAACAATCTCATTTACTGTTTCATATTGCAAAAATCTTGAGACTATAAAATTATCCAACAATAATTTATCCGGTCCTATACCTGAGCAGCTTGCAAGCATCCCTGTTCTTGGTGTTGTAGACTTATCACACAATAACCTCAGTGGCCATATACCTACAAAGTTTAGCACTTCTTCTAGCTTACAATTTCTTAATGTGTCTTTCAACTACATCTCTGGTTCAATTCCCAAAGGAAACTTATTCAGATTCATGGATAACAGTGCATTTGTTGGGAATCCAGAGCTATGTGGAGCACCTCTAAAACCATGTTCTGATTCAGTTGGAATATTGGGAAGTAAAGGCACATGGAAGCTTAAAAGTGTAGTGCTATTGTGTGCAGGGTTGCTCATATTCCTTGTTGCTGCATTAGCTTTTGGAATAGTTTATTTCAGGCGAGGATTTAAAAGCCAATGGAAGATGATCTCATTTGTTGGGCTTCCTCAGTTTACAGCTAATGATGTTTTGACAAGTTTCAATACCACAGAATCAAGATCACCATCAGTTTCAAAAGCTGTTCTGCCAACTGGGATAACAGTTTTGGTGAAGAAGATTGAGTGGGAAAAGAGGAACATTAAAGTGGTGTCAGAGTTTATAATGAGACTAGGAAATGCAAGACACAAGAACTTGATCAGATTACTAGGTTTTTGCTACAACCAGAATCTAGCTTATATTTTATATGACTACTTACCCAATGGGAACTTGGAAGAGAAAATTGGGATGAAAAGGGATTGGGCAGCTAAATTCAGAATTGTGATTGGCATTGCCAAGGGACTTTGCTTCCTTCACCATGACTGTTACCCAGCCATCCCCCATGGAGACTTGAAGTCTAGTAATGTAGTATTTGATGAAAATATGGAACCCCACTTGGCAGAATTTGGCCTCAAGCATGTGTTGAAGTTGAGCAAAGGTTCATCTCCCGCCACAACTTCTAGCTGGGAACAACCAGAATACAATGAAGCCATGAAAGAGGAATTCTACGCCGATGTCTACAAATTTGGAGAGAAGATTCTGGAGATTTTAACTAATGGAAGGCTGACAAGTGCAACTGCTAGCATACACAGCAAACCAAGAGAGGTTCTTTTGAGAGAAATTTACGATGAAAATGATGATGTGGGTTCTGCAAGTTCGCTGCAAGAAATGAAACTGGTTCTTGAAGTGGCTTTGCTTTGCACCAGAAGCAAGTCGTCGGATCGCCCATCCATGAAAGATGCCTTAAAGCTTTTGTCAGGTTCAAAGCCTCCAGAAGATCACAAATATTAA 2868 0.4055 MEILKFFYFNLLLATFFVFFFLAVSAMDSYSEALLSLKSELVDDEDSLHDWMVVNSTGKSNNACCSWSGIKCDNNSKTVTSIDLSMKKLGGVISGKQFSVFTKLEYLNLSHNFFSGQLPLEIFNLTGLRSLDISRNNFSGHFPGGISSLKNLLVLDAFSNSFSGPLPAELSELEHLKVLNLAGSYFKGPIPSEYGSFRSLEFLHLAGNLLTGNLPPELGNLKTVTHMEIGYNSYQGFIPSELGNMSELEYLDIAGANLSGPIPKQLSNLTNLQSLYLFRNQLTGSIPSEFSKIKSLTDLDLSDNLISGPIPESFSELENLRLLSLMYNDMNGTVPEGIAELSNLETLLIWNNYFSGSLPQSLGKNSNLMWVDVSTNNFVGSIPPDICMRGVLYKLILFSNRFSGSLSPSLSNCSSLVRVRLEDNLFTGNIPLKFRHLPDISYVDLSRNKFLGGIPSDISQANKLTYFNVSNNPLLRGTIPEKTWSLPLLQNFSASACGISGNLPPFESCRSVSSIELDRNNLFGTISFTVSYCKNLETIKLSNNNLSGPIPEQLASIPVLGVVDLSHNNLSGHIPTKFSTSSSLQFLNVSFNYISGSIPKGNLFRFMDNSAFVGNPELCGAPLKPCSDSVGILGSKGTWKLKSVVLLCAGLLIFLVAALAFGIVYFRRGFKSQWKMISFVGLPQFTANDVLTSFNTTESRSPSVSKAVLPTGITVLVKKIEWEKRNIKVVSEFIMRLGNARHKNLIRLLGFCYNQNLAYILYDYLPNGNLEEKIGMKRDWAAKFRIVIGIAKGLCFLHHDCYPAIPHGDLKSSNVVFDENMEPHLAEFGLKHVLKLSKGSSPATTSSWEQPEYNEAMKEEFYADVYKFGEKILEILTNGRLTSATASIHSKPREVLLREIYDENDDVGSASSLQEMKLVLEVALLCTRSKSSDRPSMKDALKLLSGSKPPEDHKY 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0852 955 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 343 945 - -
Lele19g0852 955 Gene3D Transferase(Phosphotransferase) domain 1 764 954 - -
Lele19g0852 955 Pfam Leucine rich repeat 270 329 IPR001611 GO:0005515
Lele19g0852 955 SUPERFAMILY L domain-like 310 625 - -
Lele19g0852 955 ProSitePatterns Serine/Threonine protein kinases active-site signature. 805 817 IPR008271 GO:0004672|GO:0006468
Lele19g0852 955 Pfam Leucine Rich Repeat 103 120 IPR001611 GO:0005515
Lele19g0852 955 MobiDBLite consensus disorder prediction 930 955 - -
Lele19g0852 955 SMART LRR_typ_2 269 292 IPR003591 -
Lele19g0852 955 SMART LRR_typ_2 197 221 IPR003591 -
Lele19g0852 955 SMART LRR_typ_2 101 125 IPR003591 -
Lele19g0852 955 SMART LRR_typ_2 341 365 IPR003591 -
Lele19g0852 955 FunFam Leucine-rich repeat receptor-like protein kinase TDR 192 295 - -
Lele19g0852 955 Gene3D Ribonuclease Inhibitor 186 285 IPR032675 -
Lele19g0852 955 FunFam Leucine-rich repeat receptor-like protein kinase TDR 685 764 - -
Lele19g0852 955 FunFam Leucine-rich repeat receptor-like protein kinase TDR 314 628 - -
Lele19g0852 955 SMART serkin_6 703 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele19g0852 955 Gene3D Ribonuclease Inhibitor 27 185 IPR032675 -
Lele19g0852 955 FunFam Leucine-rich repeat receptor-like protein kinase 27 191 - -
Lele19g0852 955 FunFam Leucine-rich repeat receptor-like protein kinase TDR 765 952 - -
Lele19g0852 955 Pfam Leucine rich repeat N-terminal domain 32 73 IPR013210 -
Lele19g0852 955 Gene3D Ribonuclease Inhibitor 286 390 IPR032675 -
Lele19g0852 955 SUPERFAMILY Protein kinase-like (PK-like) 703 944 IPR011009 -
Lele19g0852 955 Pfam Protein tyrosine and serine/threonine kinase 711 942 IPR001245 GO:0004672|GO:0006468
Lele19g0852 955 Gene3D Phosphorylase Kinase; domain 1 684 763 - -
Lele19g0852 955 SUPERFAMILY RNI-like 81 403 - -
Lele19g0852 955 ProSiteProfiles Protein kinase domain profile. 674 955 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele19g0852 955 Gene3D Ribonuclease Inhibitor 391 630 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0852 Lele-ChrLele19 5169094 5172201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0852 10 948 Receptor kinase-like Gene Family AT5G51350 55.916 0.0 987
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lele19g0852 PK_Tyr_Ser-Thr 5.2e-21 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0702 17 18809172 18812274 Lele19g0852 19 5169094 5172201 hybridization
Lele18g0820 18 5139471 5142673 Lele19g0852 19 5169094 5172201 hybridization