Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0847 ATGGCTTTTCACGACCATCTAACTCAAGAACTAGCTTTTCAGCCTTTTACGGATGAGCAACAGTTAAGTCAAAACAGGGACATGCAGAGGATGATGCCGTTCTCCGCTGCAGCCGGGGGAGGGCCGGCACCGACGTGGCTCGTGAATAGCGCGGGGTCGTCTCTCCGGCAGCAGAATTTCCTCCACTTGCAGTCTGACTCGGCCGATGATGTTCGGGGGAGTATGATGCCGTCTTCTGAGAGGAGCAACGATCGAGACGGCGGCGATCGGAGCCGGGGCGACGGAAATTGTGAATCTGAGGATTTGGCAGAGTACAAAGCTGACATTTTGGGACATCCCCTTTACGACCAGCTCTTGTCTGCTCATGTGTCGTGCTTAAGGATTGCCACTCCGGTGGACCAGCTTCCTAGAATCGACGCCCAGCTTCAACAATCACAGCGCGTGCTTGAAAAATACTCTGGTCTCGGAAATGGTGTTGTTGATGAGAAGGAGCTTGACCAGTTCATGACGCATTATGTTCTATTGCTCTGTGCTTTCAAAGAACAACTCCAACAACATGTCCGAGTTCATGCCATGGAAGCTGTCATGGCTTGTTGGGAGCTTGAGCAGTCTCTTCAGAGCTTGACTGGTGTGTCGCCAGGCGAAGGGACAGGAGCAACAATGTCGGACGATGAAGATGAGCAGGTAGAGAGCAATGCTAACCTCTACGAAGGTGGCCTTGATGCTGGTGACAACCTCGGATTTGGTCCTCTCGTTCCCACTGAAACTGAAAGATCTTTGATGGAGCGTGTCAGACAGGAATTGAAGCATGAACTCAAGCAGGGTTACAAGGAGAAGATTGTGGATATAAGAGAAGAGATTCTGAGAAAGAGGCGTGCTGGGAAGCTGCCGGGTGACACAACCTCGCTCTTGAAAGCTTGGTGGCAATCACATTCTAAATGGCCTTATCCTACTGAGGAAGACAAGGCAAGGTTGGTGCAGGAAACAGGATTACAACTAAAGCAAATAAATAACTGGTTTATTAATCAAAGGAAAAGGAATTGGCATACCAATCCTTCATCTTCTACCTCCTCTAAAAGCAAGCGCAAGAGTAGTAATGCAGGAGAAACCAGTAACCAGAGCTTTATGTGA 1131 0.4943 MAFHDHLTQELAFQPFTDEQQLSQNRDMQRMMPFSAAAGGGPAPTWLVNSAGSSLRQQNFLHLQSDSADDVRGSMMPSSERSNDRDGGDRSRGDGNCESEDLAEYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVLEKYSGLGNGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDEDEQVESNANLYEGGLDAGDNLGFGPLVPTETERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSTSSKSKRKSSNAGETSNQSFM 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0847 376 Pfam KNOX1 domain 105 146 IPR005540 GO:0003677|GO:0005634
Lele19g0847 376 SMART KNOX1_2 103 147 IPR005540 GO:0003677|GO:0005634
Lele19g0847 376 SMART KNOX2_2 154 210 IPR005541 GO:0003677|GO:0005634
Lele19g0847 376 SMART HOX_1 289 354 IPR001356 GO:0003677
Lele19g0847 376 ProSiteProfiles ELK domain profile. 267 287 IPR005539 GO:0003677
Lele19g0847 376 MobiDBLite consensus disorder prediction 344 376 - -
Lele19g0847 376 SMART ELK_2 267 288 IPR005539 GO:0003677
Lele19g0847 376 CDD homeodomain 290 351 IPR001356 GO:0003677
Lele19g0847 376 Pfam KNOX2 domain 160 209 IPR005541 GO:0003677|GO:0005634
Lele19g0847 376 SUPERFAMILY Homeodomain-like 289 354 IPR009057 -
Lele19g0847 376 MobiDBLite consensus disorder prediction 66 98 - -
Lele19g0847 376 ProSiteProfiles 'Homeobox' domain profile. 287 350 IPR001356 GO:0003677
Lele19g0847 376 Pfam Homeobox KN domain 307 346 IPR008422 GO:0003677|GO:0006355
Lele19g0847 376 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 83 365 - -
Lele19g0847 376 FunFam homeobox protein knotted-1-like 3 isoform X1 288 349 - -
Lele19g0847 376 Pfam ELK domain 267 288 IPR005539 GO:0003677
Lele19g0847 376 MobiDBLite consensus disorder prediction 82 98 - -
Lele19g0847 376 Gene3D - 293 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0847 Lele-ChrLele19 5122577 5126099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0847 1 363 Homeobox Transcription Factor Family AT5G25220 62.884 1.17e-174 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lele19g0847 KNOX2 2.7e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele19g0847 19 5122577 5126099 Lele19g0847 19 5122577 5126099 ECH
Lele17g0709 17 18856848 18860391 Lele19g0847 19 5122577 5126099 hybridization
Lele18g0812 18 5096088 5099762 Lele19g0847 19 5122577 5126099 hybridization