Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0845 ATGGCAGGAAAACTTCCCGGAGTAGAGTGTGCTCGAAGGAGAAGGTTTCATCAGAGTGGAGTATGGACCGATTCACCATCCTCCATGGTTCCTCATACTTCTACTAGACGCTCTTCTTTCTGCTTGTACACTAGCAACCATGAATCTCTGTCTTCTTCCTCTTTACTGCAAAGAACCTTGATATACCAGGCATACCCACATGAAATGCTGGGAGGTGCAGCTGGAGAAGCCAAACAGAGATTGGATAAGAGATTAGGAACACAGAGGAAAACAGAGCTTAAAAGTAATAAGCAGAAGAGCAGAGAGAAGGTGAGGAGTGAAGCAGAGTTGCAGATAGAGATATATGGGGCGAAGAAAAATGGAAGCAGGAGATTCAGTTGGAGCAAATTGAGCTGGAAGGCATCAGAACAAGAGGAGTGTGCAGTGTGCTTAGAATCATTCAAGAATGGGGAAACTCTGATAAACCTTCCATGTGCACACAGGTTCCATTCAAGGTGTTTGCAGCCATGGCTGGAAAATAATTCTCATTGTCCTTGTTGCAGAACCACCACCATCATTTCTCACTAG 567 0.448 MAGKLPGVECARRRRFHQSGVWTDSPSSMVPHTSTRRSSFCLYTSNHESLSSSSLLQRTLIYQAYPHEMLGGAAGEAKQRLDKRLGTQRKTELKSNKQKSREKVRSEAELQIEIYGAKKNGSRRFSWSKLSWKASEQEECAVCLESFKNGETLINLPCAHRFHSRCLQPWLENNSHCPCCRTTTIISH 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0845 188 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 50 182 - -
Lele19g0845 188 SMART ring_2 140 180 IPR001841 -
Lele19g0845 188 FunFam Zinc finger family protein 114 186 - -
Lele19g0845 188 Pfam Ring finger domain 139 181 IPR001841 -
Lele19g0845 188 SUPERFAMILY RING/U-box 127 185 - -
Lele19g0845 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 186 IPR013083 -
Lele19g0845 188 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Lele19g0845 188 CDD RING-H2_PA-TM-RING 139 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0845 Lele-ChrLele19 5114021 5114852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0845 1 85 C3H Transcription Factor Family AT2G15580 52.128 1.02e-18 75.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0712 17 18868788 18869624 Lele19g0845 19 5114021 5114852 hybridization