Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0843 ATGGGTTCCACCAATAGTAGACTTCGGTGTCGCCCTTCCACCCCCCGTGTCAATGGCACTAACCGCTTCAGATTCTCCTCCCTTCTCTGCGGGGGCTCCACCTCCCGTTCCACTTACGAGATGGAAGATCAACCAACTGAACTTCATAGAGTTTCTGCATCAGAATTTAATGATGAAAATCAGAAAGTTGTTGAGGAGTCATCTATATCATGTACAGAAGCTAGAATTGGTTGCAGCCCCCGTACTGAAACTGCAAGCTCATCGGATACTAGAACTGAGTTGAGTGAGATTTCTACTGTTGAAGGTTCCTCAAGAATTGCTTCAACTAGTTGTCAAACGAAGTACTTGTCTGAAAGTAAGGAGCTAGTTCCTCCTCATCAGGTAAGTGCTGATCATAGTTATGATGAATCTTATAGGGATAGTAGCAACACAGCTAGTACTTCTTTTGTAGAACAGCAGTCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAAGATGCTGTCAATAATGTTGATGGTTCAGTGGATAGTGGTGTTTCTCAAATATCTCGTGAGACAATGTATCCAAGGAGGTCAACCTCTCACGAGCAAGGAGATTCCTCTGCCAATAACATTTCTATTGAGAATCACACACATTCAGATGTAGCTATCCATAATTCTGAATTGGTTCTTGTTGCTCAAGTTTCCAATTTACCTGTAACTTCGGAGTTGCCTGAAAATGAAAACCGTCAGGACACAATACCTTCAGGTTTAGGTTTTCTTGTGTCCAATAGGGAAAGAGGACAGGGAAATGACAGTATGTTTCTAGTTGATGTTGTTGCAATATCTTCCAATGTTTTGCCTGGCGGCAACTCTGATGTTAGTGATCGTGATGCTAGAAGGGATAGTAGAAGACTATCTTGGGATGCTTTTTCAAGACGTAGTTCCAGAAGATTTGGTGATTCTCGAACTTTTGTCTTCTCAGCTGGTGACGTTGATGATCCAAGTTCTCAAGATCAATGGCTTCTTGATTTGAGTAATAATTCCTCAAATGATATGGTGGGAGATGATTCTGGATATTTGGGCAGTAGGATTCATAGATTGAATGAGCGGATGAGGCACTCAAGATCTGAGATCTGGGAAAGACTTCGTGGTGGCCTTGATGAGATTGGTCGGTTGAATCCTTCTTGTCCATTAGGACTCCACCCTGATGGCATGTGTTCATGCGAGTCTTTCCAGATGGCTGAGGAGTCTAGTACTCGTGCAAGTATATCAAGAATAGCTATGCTTGCTGAAGCTCTATTTGAGGTTTTGGATGAAATCCATCGCCAACCTGTATCACTTGCCCTCTCCATGGTCTCTCTTCCAGCACCAGAATCAATTGTAGACTCTTTCCCTCTTAAGTGTCACAAAAAGATTGACACAGCTGATAATGGCAATGATGCTGAACTATGTTACATATGCCTGGCTGAGTATGAGGAAGGAGACAAAATACGCGTTCTGCCATGCAACCATGAGTACCATATGTCGTGTGTTGATAAGTGGCTCAAAGAAATACATGGGTTGCTAACCAGTGCTTGGAGGCTTACAGTAAAAAGAAAAGGGAATGGTTGTCCTTCACCCAGGGATAATACTTCCATTTAG 1626 0.4268 MGSTNSRLRCRPSTPRVNGTNRFRFSSLLCGGSTSRSTYEMEDQPTELHRVSASEFNDENQKVVEESSISCTEARIGCSPRTETASSSDTRTELSEISTVEGSSRIASTSCQTKYLSESKELVPPHQVSADHSYDESYRDSSNTASTSFVEQQSSDPVSVNVSANKDAVNNVDGSVDSGVSQISRETMYPRRSTSHEQGDSSANNISIENHTHSDVAIHNSELVLVAQVSNLPVTSELPENENRQDTIPSGLGFLVSNRERGQGNDSMFLVDVVAISSNVLPGGNSDVSDRDARRDSRRLSWDAFSRRSSRRFGDSRTFVFSAGDVDDPSSQDQWLLDLSNNSSNDMVGDDSGYLGSRIHRLNERMRHSRSEIWERLRGGLDEIGRLNPSCPLGLHPDGMCSCESFQMAEESSTRASISRIAMLAEALFEVLDEIHRQPVSLALSMVSLPAPESIVDSFPLKCHKKIDTADNGNDAELCYICLAEYEEGDKIRVLPCNHEYHMSCVDKWLKEIHGLLTSAWRLTVKRKGNGCPSPRDNTSI 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0843 541 MobiDBLite consensus disorder prediction 117 206 - -
Lele19g0843 541 ProSiteProfiles Zinc finger RING-type profile. 479 536 IPR001841 -
Lele19g0843 541 MobiDBLite consensus disorder prediction 139 206 - -
Lele19g0843 541 FunFam Putative RING zinc finger domain superfamily protein 446 519 - -
Lele19g0843 541 MobiDBLite consensus disorder prediction 80 105 - -
Lele19g0843 541 SMART ring_2 479 535 IPR001841 -
Lele19g0843 541 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 515 - -
Lele19g0843 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 456 540 IPR013083 -
Lele19g0843 541 Pfam RING-like zinc finger 479 506 IPR001841 -
Lele19g0843 541 SUPERFAMILY RING/U-box 465 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0843 Lele-ChrLele19 5104532 5108312 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0843 390 527 C3H Transcription Factor Family AT5G45290 47.368 6.69e-34 133