Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0839 ATGTCATCTTGTACAATACCGGGTATTGGATCTGAGCTTCTCATAATTTTCTTTGAAAGCAATGGAATGTATCATTATGCTCTATCACTGGGGTTTTCCGGATATAAGCGATTAGGGTTTCTAGCCTTTCTCGTTTTCCTCTGTAAGCTTCGGCCGCCACTCCTTCCGACAGAGAGAGCCCCAGCAACCATGGCTGAACAAACTGAGAAGGCTTTTCTGAAGCAACCGAAAGTGTTCCTGTGCTCCAAGAAATCCGGCAAGGGAAAGAGGCCTGGAAAAGGTGGGAATCGTTTCTGGAAATCCATTGGGTTGGGGTTCAAGACTCCTAGGGAGGCCATTGAAGGAACCTATATTGATAAGAAGTGCCCCTTCACTGGTACTGTTTCTATCCGAGGTCGTATCTTAGCTGGCACTTGTCACAGTGCAAAGATGACAAGGACCATTATTGTTAGGAGGAATTATCTTCATTTTGTCAAGAAGTATCAGAGATATGAGAAAAGGCATTCAAATATTGCTGCTCACATATCACCTTGCTTTCGTGTGAAGGAAGGGGATCATGTTATTATTGGCCAATGCAGGCCACTCTCAAAGACGGTGAGGTTCAATGTGTTGAAGGTGATCCCTGCAGGATCTTCTGGTGGTGTGAAAAAGGCATTCACTGGAGCTTAA 669 0.4484 MSSCTIPGIGSELLIIFFESNGMYHYALSLGFSGYKRLGFLAFLVFLCKLRPPLLPTERAPATMAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMTRTIIVRRNYLHFVKKYQRYEKRHSNIAAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGVKKAFTGA 222
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0839 222 Gene3D - 56 221 - -
Lele19g0839 222 TIGRFAM uS17_arch: ribosomal protein uS17 117 206 IPR028333 -
Lele19g0839 222 ProSitePatterns Ribosomal protein S17 signature. 184 196 IPR019979 GO:0003735|GO:0005840|GO:0006412
Lele19g0839 222 Pfam Ribosomal protein S17 137 205 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lele19g0839 222 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 73 212 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lele19g0839 222 Pfam Ribosomal_S17 N-terminal 67 135 IPR032440 -
Lele19g0839 222 PRINTS Ribosomal protein S17 family signature 194 201 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lele19g0839 222 PRINTS Ribosomal protein S17 family signature 184 194 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lele19g0839 222 PRINTS Ribosomal protein S17 family signature 151 174 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lele19g0839 222 SUPERFAMILY Nucleic acid-binding proteins 131 210 IPR012340 -
Lele19g0839 222 FunFam 40S ribosomal protein S11 64 221 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele19g0839 Lele-ChrLele19 5082885 5086819 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0839 64 221 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 91.772 1.04e-95 274