Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0838 ATGGCAAGTAATGGTACTGAAAAGATCCCTATCAATAATGATACTGAAGGTTCAGAAACTGCCATTGAGATAAAGATTAAAACATTGGACTCACAAATTTATACGCTCAAAGTGGATAAGCAGATGCCTGTTCCTGCTTTGAAGGAACAGATTGCTTCTGTAACTGGAGTTCTGTCAGAGCGGCAGCGGTTAATTTGTCGAGGAAAAGTTCTAAAGGATGATCAACTCCTTTCTGCCTACCATGTTGAAGATGGTCATACCTTGCATCTGGTTGTGAGGCAACCTGATCTACCTGGAAATTTGCCCAATCAATCAGCAACTGACCCACATTCAAGCACAAACAATAGTCACAGTAATCAAATAGCTCCTGGCGTTTTTATTGAAACTTTTAATGTGCCCGTTCAGGGAGATGGAATTCCTCCAGAAGTTAATAGGATCATTTCTGCTATTCTTGGATCTATTGGAATTTCAAATTTTCCAAGTGGCAGTGAAGGGATTGATGTCAGGGGGCATGATTCCCGAGGGCTTGGGAGAACATCAGGTTCTAGTGGTTTATCTGATTCATTTCATCCTCAACCTGAACAAGCTGGTTTGCGGAGTTCATCTGATAGATCACGTAATATATTTGGACTTCCAACAGCAGCTTCATCTTTGGGATCATTACAGGCTCCTGTCATTCCTGATTCTTTGACAACTTTGTCTCTGTATGGGAGTCATCTAAGGCATGAATTTGAAGCCATTGTGAGAGAAGGGGGAAATAGTACCCAAGCAGCTGAGTCTCACAGGAATGAAGCATCAATTTCTTCTTCACCTTCAGGTTCTACACCAGAAGGGCTTTTGTCACCTGCGTACTTGGCAGAAGTCTTGCATTCTACCAGACGGATGTTCATTGAACAGGCTAATGAGTGCTTATTTCAACTTGCAACACAGCTCGAGAACCAAGCAAATGTAACTGATCCCTTGTTGAGGTCAAACATTCAGTCTAGGGCTTGGAGGACTGGAGTTCTGTCTTACAATCTTGGTGCACTTTTACTGGAGCTTGGTCGCACAACCATGGCATTACGCTTGGGTCAAACACCGTTTGAAGCTGTAGCTAATGGCGGACCAGCAGTTTTTATATCCTCATCTGGTCCTAACCATATCATGGTTCAGCCTCTCCCTTTTCAACCTGGAGCAGGCTTTGGCTCTGCCCCTGTGGGAGCTGTGCAGTCCCCCTCTGGTTTAGGTAGTGGACTTGGCTCCAGTTTTTACCCAAGGCGTATAGATATTCAGATACGGCGAGGTACATCAACATCTTCAGCTAATGCCAACAGAGAAGAACATGGGGATACACAATCTGCCTCAGTACAAAGAAATCCTGTTGAAATTTCTGTCAATCAAACAAGCTCGAGACTTCCTGAGGATTTATCTTTTGGTGGGGAGTCAGGAGTACGGATGGTGCCAATTAGAACCATGGTTGCAGCAGTACCTAGCCAGTTAGGTCGCAACCCTTCAGAATCTTCTGCTAATTCTATAGGGCTTTACTATCCTGTTATTGGGAGATTTCAGCATGCACCTTCTGACAATGGGAATAGTGAATCAGGATCTCAACCTTCCAGTCAGCATCATGCTTCTGGTTTTCATGCAGTGCAACAGCCAACACCTGAATCTAATGGGCAAAGGCAAAGCACGGATGATCCTGCAAGAAATGGACCTTCATCGACTCCTAGCTTAAGACAAGAGCCATCTAATACCCGCAGGGTGAACATTGATATTCTGACCGCTGGTGGGCTCCAGAACAACCAAGAATCTGAGAGGCAGATACCCAATAACGTACTTCAGTTTATAAGAGCACTTTTTCCTGGTGGTGAAATTCATGTTGAAGATTCTAATTCACAAGGAACGACTGGTGGTCCTACCTCAGATCATGCTGGAACATCGACAGTCGCTGCTCATGCCCCCGAGTCAGAGCCCCAAGCTAGTGAGGAAGGAATATTTTTGTCCAATCTACTCCGCGAGGTCATGCCTCTCATATCACAAGCAGGGTCTCGGACGCATGGAACTCCTCAAGGTGAAAATGCTTCAGACGATCAAACAGCTTCTGATTCTTCCACCCAGGGTGGGATGTCGCGCAGACAAAGTGTTTCTGATCCAAGCCCTCCAAATCCTAAACGCCAAAAGATGGAGTGA 2169 0.4509 MASNGTEKIPINNDTEGSETAIEIKIKTLDSQIYTLKVDKQMPVPALKEQIASVTGVLSERQRLICRGKVLKDDQLLSAYHVEDGHTLHLVVRQPDLPGNLPNQSATDPHSSTNNSHSNQIAPGVFIETFNVPVQGDGIPPEVNRIISAILGSIGISNFPSGSEGIDVRGHDSRGLGRTSGSSGLSDSFHPQPEQAGLRSSSDRSRNIFGLPTAASSLGSLQAPVIPDSLTTLSLYGSHLRHEFEAIVREGGNSTQAAESHRNEASISSSPSGSTPEGLLSPAYLAEVLHSTRRMFIEQANECLFQLATQLENQANVTDPLLRSNIQSRAWRTGVLSYNLGALLLELGRTTMALRLGQTPFEAVANGGPAVFISSSGPNHIMVQPLPFQPGAGFGSAPVGAVQSPSGLGSGLGSSFYPRRIDIQIRRGTSTSSANANREEHGDTQSASVQRNPVEISVNQTSSRLPEDLSFGGESGVRMVPIRTMVAAVPSQLGRNPSESSANSIGLYYPVIGRFQHAPSDNGNSESGSQPSSQHHASGFHAVQQPTPESNGQRQSTDDPARNGPSSTPSLRQEPSNTRRVNIDILTAGGLQNNQESERQIPNNVLQFIRALFPGGEIHVEDSNSQGTTGGPTSDHAGTSTVAAHAPESEPQASEEGIFLSNLLREVMPLISQAGSRTHGTPQGENASDDQTASDSSTQGGMSRRQSVSDPSPPNPKRQKME 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0838 722 MobiDBLite consensus disorder prediction 674 714 - -
Lele19g0838 722 MobiDBLite consensus disorder prediction 673 722 - -
Lele19g0838 722 MobiDBLite consensus disorder prediction 98 120 - -
Lele19g0838 722 MobiDBLite consensus disorder prediction 429 452 - -
Lele19g0838 722 ProSiteProfiles Ubiquitin domain profile. 22 97 IPR000626 GO:0005515
Lele19g0838 722 MobiDBLite consensus disorder prediction 253 277 - -
Lele19g0838 722 MobiDBLite consensus disorder prediction 96 120 - -
Lele19g0838 722 MobiDBLite consensus disorder prediction 618 654 - -
Lele19g0838 722 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 11 717 - -
Lele19g0838 722 SMART ubq_7 22 93 IPR000626 GO:0005515
Lele19g0838 722 MobiDBLite consensus disorder prediction 165 205 - -
Lele19g0838 722 MobiDBLite consensus disorder prediction 176 205 - -
Lele19g0838 722 CDD Ubl_ubiquitin_like 24 91 - -
Lele19g0838 722 MobiDBLite consensus disorder prediction 518 579 - -
Lele19g0838 722 MobiDBLite consensus disorder prediction 621 640 - -
Lele19g0838 722 Pfam Ubiquitin family 24 94 IPR000626 GO:0005515
Lele19g0838 722 SUPERFAMILY Ubiquitin-like 17 98 IPR029071 -
Lele19g0838 722 MobiDBLite consensus disorder prediction 251 278 - -
Lele19g0838 722 Gene3D - 15 120 - -
Lele19g0838 722 MobiDBLite consensus disorder prediction 516 579 - -
Lele19g0838 722 FunFam Large proline-rich protein BAG6 14 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0838 Lele-ChrLele19 5076986 5082683 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0838 22 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.111 3.28e-08 51.2