Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0827 ATGGGTCCCAACCAACAAAGGATAGGAAAAATCTTTCAGTGTACAAAAGGACCAACACAACGAAGATTCGCTATTCTTTTCTTCCATTCCATTCCTCACATTCATTCTTTTCTCTCTTCCTCAGACTTTCTTGCTCAGTTCCATGTCTCGTCTCTGAGAGTTTTCTCGGTTAAAGTTTTCATGCTTCTCCCAGAATCTGTCACACAGATAAGTTCTTCCGTATCAAACTCTGGGTTTTCATTTTCCCTGATAGAATCTTGGGGGGCTGTCAGGTTCTTTTACTGTTTGATTCTTGGGCCCAAAATGGGTAACAAAAAGAAACAAGTTGGAGAAAAATCAAGTGATGAGGATACTGAGCTGTTCATTTCAATATCTCAAGAGCTAAAGAGTGAAGGGAACAAGCTGTTTCAAAAGAGAGATCATGAAAGAGCCATCTTAAAATATGAGAAAGCCATTAAATTGCTACCAACAAATCATATAGATGTGTCTTGTCTGAGGAGTAACATTGCTGCGTGCTACATGCAGATGGGACTCGCCCTGTACCCAAATGCGATTCATGAATGCAACTTAGCTCTTGAAGTTACTCCAAACTACAGTAAAGCCCTTTTGAAGAGGGCAAGGTGCTATGAGGCTTTAAATAGTCTGGATTTAGCTCTGAGCGATGTTACTACTGTACTGAAGAAGGAGCCAAACAATACTATGGCATTGGAAATTTTGGAGAAGGTGAAAAATGCACTCGAGGAGATGGGATTAAAAGTATCTGACATAGAAATTGAGTTGCCTTCTGATCATGCTGAATCTCCTTGTGTGCCTCCAAAAGTAGTAAAAGACAAGAAACACAAGAAAAACAAAAAGGTTGAGTTGGTGACTGCAGATAATGTCGGTGTGGAAAATTCAGCTGAGAAGTTGGAAGACAAAAAGGTTGAGGACAGTGTTGAGCAGAAGAAGGCTGTGAAAAAATCTGAAGACAAGAAGGTTGAGGACAGTGTTGAGCAGAGGAAGGCTGTGAAAAAGTCTGAAGAGGAGTTGGAAGACAAGAAGGCGGAGGACAGTGTTGAGCAGAAGAAGGCTGTGAACAAGTCCAAAAAGAAGGCGGAAAAGGAAAAGATTAATGAGAAGAAGACTGATATAAAGGAGGTTATTGGTGATGCAGCTAAGAAAACAGTGAAACTTGTTTTTGGTGAGGACATTAGATTTGCAGAATTACAAGTTAATTGCAGCCTGCAGCATCTAAGGGAAGTTATCAGCGACCGATTTCCGAATGTAGGACCAGTTCTTGTCAAATATAGGGATCAAGAAGGTGATTTGGTCACAATCACTTCCGATGAAGAATTAAGATGGGCTGAAACGTCAGCAAGATCAGAGAGTTCTATCCGCCTTTATATAGTGGATGCTGATCCTGAGAAGGATCCATTGTTTGAGAAAATTAATGAAAAGAAGGAGCAAAAAGAGCCTGTCATTAATAATGCACTTCAGAATGATTGTGTGGTTAAAGAAAATGAAATGATTAAGTCATCATCTTGTATTGAGGATTGGATAATCCAGTTTGCCCAACTGTTCAAGAACCATGTTGGAATTGAATCTGACAGGTATTTAGACTTTCATGAACTCGGAATGAAACTCTATTCTGAGGCTATGGAGGAGACAGTTAATAATGAAGAAGCACAAAGCCTGTTTGACATGGCAGGAGCTAAGTTCCAAGAGATGGCGTCTTTAGCGTTGTTCAACTGGGGAAATGTTCACATGTCCAGGGCAAGGAAGAAGGTGAACTTCACAGAAGAATCTTCTAAAGAGAATCTGCATGAACAGATAAAAAAGTCATACGAATGGGTGCAGCAAGAATACAAAAGGGCGGGAGAAAAATATGAAGCAGCCATTAAAATGAAACCCCGTTTTTATGAAGGCTTCCTGGCACTAGGGCAACAGCTGTTTGAGCAAGCAAAACTTTCTTGGTATTATGCAATTAAAACAAATGTTGACTTAGCAACATGGCCCTCTGCCGAAGTTCTTCAACTTTACACCAATGCTGAGGAAAACATGGAGAAAGGAATGCAGATATGGGAAGAATCAGAAAAGCAATGTTTGAATGAAGATTCAGATTCTAAATCAAAGGATATCAAATTCCATTTACAGAATATGGGGTCGGATTGCCTATTGCAGAATAAATCATCAGAAGAAGAAATAGCAGCTCAGGCAGCAACCTTGAAGTCTCGAATAAATATCCTTTGGGGTACAATGCTATATGAGCGTTCAATTATGGAATTCAAATTAGGGTCACCACTATGGGATGAATGTCTGGAACTTGCAGTTGAGAAGTTTGAACTTGCTGGAGCTTCTCCAACAGATATAGCTGTAATGTTGAAGAACCACTGCTCAAATGAAACTGCTGCTGAAGGTCTAGGATTCAACATTGATGAAATAGTACAAGCATGGAATGAGATGCATGAAGCTAGAAGGTGGCAGGATCGAGTTTCGTCGTATCATTTGGAACCCTTATTCAGAAGGCGAGCTTCAAAAATTTATCATGCCTGGGAACTTGCATGA 2544 0.4013 MGPNQQRIGKIFQCTKGPTQRRFAILFFHSIPHIHSFLSSSDFLAQFHVSSLRVFSVKVFMLLPESVTQISSSVSNSGFSFSLIESWGAVRFFYCLILGPKMGNKKKQVGEKSSDEDTELFISISQELKSEGNKLFQKRDHERAILKYEKAIKLLPTNHIDVSCLRSNIAACYMQMGLALYPNAIHECNLALEVTPNYSKALLKRARCYEALNSLDLALSDVTTVLKKEPNNTMALEILEKVKNALEEMGLKVSDIEIELPSDHAESPCVPPKVVKDKKHKKNKKVELVTADNVGVENSAEKLEDKKVEDSVEQKKAVKKSEDKKVEDSVEQRKAVKKSEEELEDKKAEDSVEQKKAVNKSKKKAEKEKINEKKTDIKEVIGDAAKKTVKLVFGEDIRFAELQVNCSLQHLREVISDRFPNVGPVLVKYRDQEGDLVTITSDEELRWAETSARSESSIRLYIVDADPEKDPLFEKINEKKEQKEPVINNALQNDCVVKENEMIKSSSCIEDWIIQFAQLFKNHVGIESDRYLDFHELGMKLYSEAMEETVNNEEAQSLFDMAGAKFQEMASLALFNWGNVHMSRARKKVNFTEESSKENLHEQIKKSYEWVQQEYKRAGEKYEAAIKMKPRFYEGFLALGQQLFEQAKLSWYYAIKTNVDLATWPSAEVLQLYTNAEENMEKGMQIWEESEKQCLNEDSDSKSKDIKFHLQNMGSDCLLQNKSSEEEIAAQAATLKSRINILWGTMLYERSIMEFKLGSPLWDECLELAVEKFELAGASPTDIAVMLKNHCSNETAAEGLGFNIDEIVQAWNEMHEARRWQDRVSSYHLEPLFRRRASKIYHAWELA 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0827 847 Pfam PB1 domain 388 464 IPR000270 GO:0005515
Lele19g0827 847 SUPERFAMILY CAD & PB1 domains 387 473 - -
Lele19g0827 847 ProSiteProfiles PB1 domain profile. 386 465 IPR000270 GO:0005515
Lele19g0827 847 Coils Coil 239 259 - -
Lele19g0827 847 Gene3D Tetratricopeptide repeat domain 123 252 IPR011990 GO:0005515
Lele19g0827 847 SMART PB1_new 386 465 IPR000270 GO:0005515
Lele19g0827 847 SMART tpr_5 163 198 IPR019734 GO:0005515
Lele19g0827 847 SMART tpr_5 199 232 IPR019734 GO:0005515
Lele19g0827 847 SMART tpr_5 125 158 IPR019734 GO:0005515
Lele19g0827 847 MobiDBLite consensus disorder prediction 314 369 - -
Lele19g0827 847 ProSiteProfiles TPR repeat profile. 125 158 IPR019734 GO:0005515
Lele19g0827 847 PANTHER PROTEIN CLMP1 105 845 IPR044517 -
Lele19g0827 847 Coils Coil 326 368 - -
Lele19g0827 847 SUPERFAMILY TPR-like 120 248 IPR011990 GO:0005515
Lele19g0827 847 CDD PB1 388 462 - -
Lele19g0827 847 Gene3D - 385 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0827 Lele-ChrLele19 4991380 4994961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0827 113 232 Calmodulin-binding Proteins AT3G25230 34.091 1.01e-08 57.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele19g0827 19 4991380 4994961 Lele19g0827 19 4991380 4994961 ECH
Lele17g0731 17 18999667 19001977 Lele19g0827 19 4991380 4994961 hybridization
Lele18g0790 18 4955247 4959336 Lele19g0827 19 4991380 4994961 hybridization