Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0779 ATGCCTGCGCTCGTCAATTACAGTGGTGATGATGACCTCTATCCTGTGGGGTCAGTTTTTAAGGCTAGGTGTCTTTTATTCAAGGGCTTTGGTACAACTTGGGTTTTGTTTTTAATCAAGTCCTTGTTTTTGCAGGCTTATCTTGCTATATCAATTATAACCATGTCCTCGAATCAAACTAGTGTTGGTGAAGTTGGTAGTGAAGCGATTCGACTTGTGTTTTTGGATAGTAGAGGTGAAGAGACAACAATATTACTAGCTTATGATGATTCAGACACTGAATTTGAAGACATGGACGACGATGAGGTTGAAGAAGCTGCAGGAATGGTGAATCCTGCAACCCAAAAGTCAATAGAAAGTTTAGTAAAAGTTAGAATTGAAGAGCCTGAATTCTGCTCCATATGTTTCGAGGAGATTCCATCAAATAAAAAACAAGAGGAAGAAGAGGAAGAAGCAGCAGTTCGAATCCCTAAACCTTGTGGTCATGTTTATCACCTTAATTGCATTCTCAAGTGGTTCAACAAGCAGAATACTTGTCCTTTGTGTCGCTGCAAGATTCCAAGCTAG 567 0.3986 MPALVNYSGDDDLYPVGSVFKARCLLFKGFGTTWVLFLIKSLFLQAYLAISIITMSSNQTSVGEVGSEAIRLVFLDSRGEETTILLAYDDSDTEFEDMDDDEVEEAAGMVNPATQKSIESLVKVRIEEPEFCSICFEEIPSNKKQEEEEEEAAVRIPKPCGHVYHLNCILKWFNKQNTCPLCRCKIPS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0779 188 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 94 187 - -
Lele19g0779 188 Pfam RING-H2 zinc finger domain 132 183 IPR024766 GO:0008270
Lele19g0779 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 188 IPR013083 -
Lele19g0779 188 SUPERFAMILY RING/U-box 121 186 - -
Lele19g0779 188 ProSiteProfiles Zinc finger RING-type profile. 132 183 IPR001841 -
Lele19g0779 188 SMART ring_2 132 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0779 Lele-ChrLele19 4603539 4608840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0779 111 186 C3H Transcription Factor Family AT2G03000 38.158 1.11e-09 55.1