Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0777 ATGGTGCATTCAAAGAAGTTCAGAGGTGTCAGACAGCGTCATTGGGGCTCCTGGGTCTCCGAAATTCGCCACCCTCTTCTGAAGAGGAGGGTGTGGTTGGGGACATTTGAGACGGCGGAAGAAGCGGCGAGAGCGTACGATCAAGCTGCCATTTTGATGAGTGGACGGAATGCTAAGACGAATTTCCCGATATCCCAGACTCCGGACGGTTATCCTAAGGCAGCAGCGGCCACAGATCATAACAAGGCTGCAGGGCCAGCGAGGGATCTGGAAGAGATTCTACACGCGAAGCTGAGGAAATGTGGGAAGCTGCCGTCGCCTTCCATGACGTGCCTGAGGCTGGACACCGAGAACTACAACATTGGAGTGTGGCAGAAACGCGCCGGCCAGCGTACGGATAACTCCAACTGGGTGATGACAGTCGAGCTGGGAAAGAAGACCAACAGTAACAGGGAGAATAACACCAACAGTAGAAATGGGGTAGAGAAAACGACGTCGTCATGGACGTGCGATGAGTCTGCAATGTCAGAAGGGCATGGAGTGACGATGGAAGGGGGAGGGATGAACGAAGAAGAAAGGGTTGCATTGCAAATGATCGAAGAACTTCTGAACAGGAACTGTCCAAGTCCCCCATTATCGTCATCAGGACCTTCCTTTCATGATATGGTTCATGATGAAGAAGACAACAACCATGCTCATCATGGTGGTGAAAGCTTTCTCTTTTGA 726 0.5152 MVHSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPISQTPDGYPKAAAATDHNKAAGPARDLEEILHAKLRKCGKLPSPSMTCLRLDTENYNIGVWQKRAGQRTDNSNWVMTVELGKKTNSNRENNTNSRNGVEKTTSSWTCDESAMSEGHGVTMEGGGMNEEERVALQMIEELLNRNCPSPPLSSSGPSFHDMVHDEEDNNHAHHGGESFLF 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0777 241 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Lele19g0777 241 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Lele19g0777 241 MobiDBLite consensus disorder prediction 147 173 - -
Lele19g0777 241 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Lele19g0777 241 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Lele19g0777 241 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Lele19g0777 241 MobiDBLite consensus disorder prediction 207 241 - -
Lele19g0777 241 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Lele19g0777 241 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Lele19g0777 241 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 163 - -
Lele19g0777 241 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Lele19g0777 241 MobiDBLite consensus disorder prediction 220 234 - -
Lele19g0777 241 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0777 Lele-ChrLele19 4576737 4577594 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0777 1 206 AP2-EREBP Transcription Factor Family AT1G15360 56.019 7.88e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele19g0777 AP2 1e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0788 17 19434917 19435782 Lele19g0777 19 4576737 4577594 hybridization