Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0763 ATGCATAGGAATCACGTAAAGAGGGAAAGAAAGGTAGTGCGTGTGTACATAAGCACTATAATTTCCCACCTTACAATAAACCAGTCCACTTTCAAAATCCCACCATTTCTAAGTATCTGTCTTCCAGATATTTCTGCTTCTGGAACCCCATTTTCAGAAGACATCCATGTCCCAAGTTCTATAAAGCCTCCCAACTCTAGCACAAGATTTCATCACAGCAACTTAACCAGCTTTTCTCTGTCAAAACATTGCTGGGCTACTACTGTTCTTAAGATGAGCTACACGGGACGTGATTGGCTGTGTGGTGCTTGTCAGCATGTTAATTTTAGGAGGAGAGATGCATGCCAACGTTGTGGGTATCCCAAGTTTGGAGGTGGTGATCAGTCTCCAACCTGTGAAAGCAATAGGAACAGTGAAGGATTGCCAGGAGACTGGTTTTGCAGTGCTGACAACTGCGGAGCTCACAACTACGCGAGCCGATCGAGATGCTTTAAATGTTGTTCTCTCAAAGATGACAGTAATGGTGGCTCTGATAGATATGGACTTACAAACAACTTGCCCCCACCAGGATGGAAGCCTGGTGATTGGATGTGCTCTAGCTGTGGAGCGCATAACTATGCTTGTAGGGAAGAATGCTTCAAGTGCAAAACATCAAATGATTATGATGAAGGAATCCCAACGGATTTATGTGGGACTCAACACAGTGGGGGATTCCATGTTTCTTTTGCATCTAGTTTTCCCGATCATCACCCTGGCTTCATGCTATCGCCGTTACCATTTGCGGTGGATGACGATTCCAATGGAAGCTGGCCGCAATTCCCAATAAACAACGAACTTTTCGACTCACATTCAACATTTGATCAGCTTCCTTCGTTCAAGAGGCCCAGAACATCCGAAAGCAATCCCTTCGATCCCTCGCCATTCCCGCCGCCGCCCATGAATTACAGGATGCACCACCCACAAAATCCTCCCACAAGCAGAGGAGGAACAAGCCACATTTTTTATAAGACCCGCCTGTGTGCAAAATTCAGAATGGGTACATGTAGGAACGGCGAGAATTGCAATTTTGCTCATGGCAATGAGGACGTGAGGCTGCCACCCCCAAATTGGCAGGAACTTATTGGCTTACGCGATGAAGAACGATCATCCGCAAATTGGGACGATGACCAGAAAATCATACATAAGATGAAGCTTTGCAAGAAGTATTACAATGGTGAGGAATGCCCTTACGGTGAAAATTGCAATTTTCTTCATGAAGACCCGTCCAAGTTCAGGGATGATGCAGGGAGGTGCAGGGAGAGCTCAGCTATAAGCCTTGTGGCTAATGGATCTCCAAAGTCGCACTTGAATGGCCCTAATCATTCAGACAATAATAAGACTGTCAACATGGGGTGTGATGGTTATAGAACAAGTGGGAAGGCTACTTTCTGGAAGACCAAGTTGTGCAGCAAGTGGGAGACAACAGCACAGTGCCCTTTCGGGGATAAATGTCATTTTGCCCATGGACAAGCAGAGTTACAAGTGCCTGGTGGACGTAGTGAAGCAGAAGCTATAGGAACTCCATCAATTCCTGTGAATGATGTGTCTCCCGTCAACGCTGCAAGTATACTTGATTCAAAGGAAGAGGAGCAGAAAAAGAAGAATTTGCTCAAGTGGAAAATAAACAAGAAGGTCAATCGAATTTATGCTGATTGGCTTGATGACCTTCCATTGGCAAGGTAG 1722 0.4547 MHRNHVKRERKVVRVYISTIISHLTINQSTFKIPPFLSICLPDISASGTPFSEDIHVPSSIKPPNSSTRFHHSNLTSFSLSKHCWATTVLKMSYTGRDWLCGACQHVNFRRRDACQRCGYPKFGGGDQSPTCESNRNSEGLPGDWFCSADNCGAHNYASRSRCFKCCSLKDDSNGGSDRYGLTNNLPPPGWKPGDWMCSSCGAHNYACREECFKCKTSNDYDEGIPTDLCGTQHSGGFHVSFASSFPDHHPGFMLSPLPFAVDDDSNGSWPQFPINNELFDSHSTFDQLPSFKRPRTSESNPFDPSPFPPPPMNYRMHHPQNPPTSRGGTSHIFYKTRLCAKFRMGTCRNGENCNFAHGNEDVRLPPPNWQELIGLRDEERSSANWDDDQKIIHKMKLCKKYYNGEECPYGENCNFLHEDPSKFRDDAGRCRESSAISLVANGSPKSHLNGPNHSDNNKTVNMGCDGYRTSGKATFWKTKLCSKWETTAQCPFGDKCHFAHGQAELQVPGGRSEAEAIGTPSIPVNDVSPVNAASILDSKEEEQKKKNLLKWKINKKVNRIYADWLDDLPLAR 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0763 573 Gene3D - 391 423 - -
Lele19g0763 573 Gene3D - 329 365 - -
Lele19g0763 573 Gene3D - 470 508 - -
Lele19g0763 573 ProSiteProfiles Zinc finger C3H1-type profile. 393 421 IPR000571 GO:0046872
Lele19g0763 573 MobiDBLite consensus disorder prediction 286 329 - -
Lele19g0763 573 FunFam Zinc finger CCCH domain-containing protein 329 365 - -
Lele19g0763 573 MobiDBLite consensus disorder prediction 286 301 - -
Lele19g0763 573 FunFam Zinc finger CCCH domain-containing protein 471 508 - -
Lele19g0763 573 ProSiteProfiles Zinc finger RanBP2 type profile. 192 221 IPR001876 -
Lele19g0763 573 ProSiteProfiles Zinc finger C3H1-type profile. 334 361 IPR000571 GO:0046872
Lele19g0763 573 SUPERFAMILY CCCH zinc finger 475 507 IPR036855 GO:0046872
Lele19g0763 573 SMART zf_4 143 169 IPR001876 -
Lele19g0763 573 SMART zf_4 97 121 IPR001876 -
Lele19g0763 573 SMART zf_4 194 218 IPR001876 -
Lele19g0763 573 SMART c3hfinal6 334 360 IPR000571 GO:0046872
Lele19g0763 573 SMART c3hfinal6 476 503 IPR000571 GO:0046872
Lele19g0763 573 SMART c3hfinal6 393 420 IPR000571 GO:0046872
Lele19g0763 573 ProSiteProfiles Zinc finger RanBP2 type profile. 94 124 IPR001876 -
Lele19g0763 573 SUPERFAMILY Ran binding protein zinc finger-like 93 124 IPR036443 -
Lele19g0763 573 Pfam CCCH-type zinc finger 397 418 IPR041367 -
Lele19g0763 573 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 335 359 IPR000571 GO:0046872
Lele19g0763 573 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 477 503 IPR000571 GO:0046872
Lele19g0763 573 ProSitePatterns Zinc finger RanBP2-type signature. 196 215 IPR001876 -
Lele19g0763 573 MobiDBLite consensus disorder prediction 302 318 - -
Lele19g0763 573 FunFam Zinc finger CCCH domain-containing protein 39 390 422 - -
Lele19g0763 573 SUPERFAMILY Ran binding protein zinc finger-like 189 220 IPR036443 -
Lele19g0763 573 PANTHER CCCH ZINC FINGER/TIS11-RELATED 234 425 IPR045877 GO:0003729
Lele19g0763 573 SUPERFAMILY CCCH zinc finger 393 420 IPR036855 GO:0046872
Lele19g0763 573 ProSitePatterns Zinc finger RanBP2-type signature. 145 166 IPR001876 -
Lele19g0763 573 ProSiteProfiles Zinc finger RanBP2 type profile. 141 172 IPR001876 -
Lele19g0763 573 Pfam Zn-finger in Ran binding protein and others 142 170 IPR001876 -
Lele19g0763 573 Pfam Zn-finger in Ran binding protein and others 192 218 IPR001876 -
Lele19g0763 573 SUPERFAMILY Ran binding protein zinc finger-like 139 173 IPR036443 -
Lele19g0763 573 ProSitePatterns Zinc finger RanBP2-type signature. 99 118 IPR001876 -
Lele19g0763 573 ProSiteProfiles Zinc finger C3H1-type profile. 476 504 IPR000571 GO:0046872
Lele19g0763 573 Gene3D - 188 220 - -
Lele19g0763 573 Gene3D - 132 172 - -
Lele19g0763 573 Gene3D - 92 124 - -
Lele19g0763 573 SUPERFAMILY CCCH zinc finger 332 365 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0763 Lele-ChrLele19 4490071 4495633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0763 476 507 C3H Transcription Factor Family AT1G68200 56.250 1.43e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele19g0763 zf-RanBP 0.0016 CL0167