Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0748 ATGGATAAGAAAAAGGTGGCGGTTCCGCTTGTTTGCCACGGCCATTCCCGGCCTGTAGTGGATCTTTTTTACAGTCCTGTTACGCCCGATGGTTTCTTCCTCATCAGTGCAAGCAAGGATTCTAGTCCTATGCTCAGAAATGGAGAGACTGGAGATTGGATTGGAACATTTGAAGGGCACAAAGGTGCGGTATGGAGTTGCTGCTTGGATACAAATGCTTTACGGGCAGCAACTGCTTCTGCTGATTTCTCATCGAAAGTTTGGGATGCATTAACAGGAGATGAATTGCACTCGTTTGAACATAAGCACATTGCTCGTGCATGTGCTTTTTCTGAGGATACACACCTTTTACTCACTGGGGGATTAGAGAAAATTCTTCGAATCTATGACTTGAATCGTCCTGATGCACCCCCCAGAGAAGTTGAGAAGTCTCCTGGTTCTATCAGAACAGTTACATGGCTTCACAGTGACCAGACAATATTAAGTTCTTGTACTGATATGGGAGGTGTCAGAAGTGGCCAAATAGTTCAGACACTTGAGACCAAGTCATCTGTGACCAGTACTGAAGTGAGTCGGGATGGTCGTTACATTATAACTGCAGATGGCTGTACGGTTAAATTTTGGGATGCAAATCACTACGAGTTGGTGAAGAGTTACGATATGCCTTGCACTGTTGAATCAGCTTCATTGGAACCTAAGTGTGGGAATAAATTTGTTGCTGGGGGAGAAGATATGTGGGTTCGTGTTTTTGATTTCCATACTGGCCATGAGATTGCGTGCAACAAGGGTCACCATGGTCCTGTGCACTGTGTACGTTTCTCTCCTGGGGGAGAATCATATGCCTCCGGATCTGAGGACGGAACCATAAGAATATGGCAAACTGGCCCTTTGACCAATGATGAGTCGGAGTCTATATCTGCAAATGGATCACTTGCAATAGTGAAGGTTAATGCAGACGAGGTTTCACGCAAGATTGAGGGTTTGCATGTTGCAGATGAGGGGAAATCCAAAGAAAAGGAATTGGCAGGGGAGGAATAA 1038 0.4528 MDKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAATASADFSSKVWDALTGDELHSFEHKHIARACAFSEDTHLLLTGGLEKILRIYDLNRPDAPPREVEKSPGSIRTVTWLHSDQTILSSCTDMGGVRSGQIVQTLETKSSVTSTEVSRDGRYIITADGCTVKFWDANHYELVKSYDMPCTVESASLEPKCGNKFVAGGEDMWVRVFDFHTGHEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPLTNDESESISANGSLAIVKVNADEVSRKIEGLHVADEGKSKEKELAGEE 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0748 345 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 261 293 - -
Lele19g0748 345 SMART WD40_4 50 89 IPR001680 GO:0005515
Lele19g0748 345 SMART WD40_4 172 209 IPR001680 GO:0005515
Lele19g0748 345 SMART WD40_4 254 293 IPR001680 GO:0005515
Lele19g0748 345 SMART WD40_4 92 130 IPR001680 GO:0005515
Lele19g0748 345 SMART WD40_4 5 47 IPR001680 GO:0005515
Lele19g0748 345 SMART WD40_4 212 251 IPR001680 GO:0005515
Lele19g0748 345 SUPERFAMILY WD40 repeat-like 5 293 IPR036322 GO:0005515
Lele19g0748 345 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 7 336 - -
Lele19g0748 345 Gene3D - 9 314 IPR015943 GO:0005515
Lele19g0748 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 57 98 IPR001680 GO:0005515
Lele19g0748 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 293 IPR001680 GO:0005515
Lele19g0748 345 FunFam Serine-threonine kinase receptor-associated protein 8 314 - -
Lele19g0748 345 Pfam WD domain, G-beta repeat 94 130 IPR001680 GO:0005515
Lele19g0748 345 Pfam WD domain, G-beta repeat 54 89 IPR001680 GO:0005515
Lele19g0748 345 Pfam WD domain, G-beta repeat 261 292 IPR001680 GO:0005515
Lele19g0748 345 Pfam WD domain, G-beta repeat 173 209 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0748 Lele-ChrLele19 4393546 4396279 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0748 9 291 Eukaryotic Initiation Factors Gene Family AT2G46290 28.391 1.62e-34 128