Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0742 ATGAAGGACCCAGAAGAAGATCAAGTTAAATCCCGAATGAAGCCTATGCAGAAACACACGGATCGTAGAAGAAGAGGTAGGAGAAGAAGCCATTGCAAACCAGAGATATTAAAAGAAAACGGGCTTGATTTAGAACTGAAGAATCCTTATTATGCTGTCTCTTGCAATAATAACAACAACAACAATAATAGCCTTGAGTTCACTCATAGGCCTGGTTTTGGCCAGCTTGGGACTAAGTGTTTGGTCAAAGCAAACCACTTTCTTGCAGATATATCAGCTTCTGACTTGAGCCATTACAGTGTTAAGATAACACCAGAAGTTACTTCTCGTAAAATAAGCAAAGCTATCATTGCTGAGTTGGTGAGGCTTCATAGAAATACAAACTTGGGGATGAGGCTTCCTGTTTATGATGGAGGAAGGAATCTTTACACTGCTGGTTTGCTTCCTTTTACGCACAAAGAATTCACCATAAGATTGACTGAAGAAGATGAGGCTACAGGCAATACCTGGGAAAGAGAGTTTAGAGTGAAAATAAAGTTCGCAACTCGTGTTAGCATGAATCAACTACGGGAGCTTCTCAGTGGGAAACAAGTGAACACCCCACAAGAAGCACTTAACATCATTGATATTGTATTGAGGGAGCTTGCAGCTCAAAGTTACGTGTCAGTTGGAAGGTTTCTCTATTCTGCTGATATTAAAAAACCACAACAACTAGGTGGTGACATGTCATCAATGGCGTTTATTGAACCACTCCCAGTCATTGATTTTGTTGCTCAAATTCTGGGTAAAGATGTGCATTCAAAACCATTGTCAGATGCAGATCGTGTCAAGATTAAGAAAGCCTTAAGAGGTGTGAAAGTTGAAGTTACTCATAGAGGAAATGTTCGAAGGAAGTACAGGATTTCAGGACTTACATCACAGCCTACAAGAGAGCTCATATTCCCACTCGATGAGCAAATGAACATGAAATCAGTAGTTGATTACTTCCGGGAGATGTATGGTTACACAATTAAGTATTCTCATCTACCATGCCTGCAAGTAGGGAATCAAAAGAAGGTGAATTATTTGCCAATGGAGACAGTTGAACAAAATGATTATGAGAATAACCATTATGCAAAAGAGTTTGGTATCAGCATAGACGACAAGCTTGCATCGGTTGAAGCCCGGGTTCTGCCTGCTCCATGGTTGAAATATCATGATACAGGAAGAGAAAAAGAGTACTTGCCACAAGTTGGTCAGTGGAATATGATGAACAAGAAAGTTATAAATGGAAGTATAGTAAGATATTGGGCATGTATCAATTTCTCACGTGGTGTTCAACAAAGCACGGCTCGTGGTTTTTGCCAACAGTTGGTTCAGATGTGCCAAATCTCAGGCATGGAATTCAGTCAAGACCCAGTAATTCCTATACATACTGCAAGACCAGATCAGGTGAAAAAGGCCCTGAAGTACGTACATTCTTCTGCTTTGGACAAACTTGAAGGGAAAGAGCTTGAGTTACTCATTGCCATTCTTCCAGACAATAACGGCTCTCTGTACGGTGATCTCAAAAGGATTTGTGAAACAGATCTGGGGTTGATTTCTCAGTGCTGCCTCACAAAACACGTCTTCAAGATTAATAGACAATACCTGGCAAATCTGGCACTTAAAATAAATGTCAAGATGGGAGGAAGAAACACGGTGCTTTTGGATGCGTTAAGTTGGAGGATTCCATTGGTTAGTGACATTCCAACAATAATATTTGGAGCTGATGTAACTCATCCAGAATCTGGAGAAGATTCTTCTCCTTCCATTGCTGCTGTTGTGGCCTCACAGGACTGGCCTGAAGTAACAAAGTATGCAGGACTAGTGTGTGCTCAGCCTCATCGCGAAGAACTTATTCAAGACCTTTTCAAGTGTTGGAAAGATCCTCAGCGCGGCGTAGTTTATGGCGGCATGATCAAGGATGGGGTAAGTGAAGGACAATTCTACCAGGTTTTGTTGTATGAGCTCGATGCTATCCGCAAGGCTTGTGCATCACTGGAGCCTAGTTACCAACCTCCAGTAACATTTGTGGTGGTTCAAAAGAGGCATCACACAAGACTCTTCTCAAGCAATCATGATGACAGAAATAGCACTGACAGGAGTGGCAACATCTTACCTGGTACACATTTTTTGCTTCAGATTCTGTACTTGCGACCAATTTCAGGACGTGTTAATAATGTACGGTGGTGGATTCTAAGATCTGTCATCCTACAGAATTTGACTTTTATTTATGCAGTCATGCAGGAATACAGGTACGCAAGATGCACAAGATCTGTTTCCGTAGTTCCTCCCGCATACTATGCTCATCTAGCAGCCTACAGAGCTCGATTCTACATGGAACCTGATGTGCATGAGAATAATGCAGCTAATAAAGCACGTGGGGAAAGATCAAAGGATGGCTCAGTTCGGCCGTTGCCAGCTCTGAAGGACAAGAAAAAGGAGCAAGGAGGAGGCTGGGGGATGGTTGGGGCTGGTGGGACAAATCACTTCATCAATCACTTGCTTTTCCTAATTTTTTCCTGA 2547 0.4205 MKDPEEDQVKSRMKPMQKHTDRRRRGRRRSHCKPEILKENGLDLELKNPYYAVSCNNNNNNNNSLEFTHRPGFGQLGTKCLVKANHFLADISASDLSHYSVKITPEVTSRKISKAIIAELVRLHRNTNLGMRLPVYDGGRNLYTAGLLPFTHKEFTIRLTEEDEATGNTWEREFRVKIKFATRVSMNQLRELLSGKQVNTPQEALNIIDIVLRELAAQSYVSVGRFLYSADIKKPQQLGGDMSSMAFIEPLPVIDFVAQILGKDVHSKPLSDADRVKIKKALRGVKVEVTHRGNVRRKYRISGLTSQPTRELIFPLDEQMNMKSVVDYFREMYGYTIKYSHLPCLQVGNQKKVNYLPMETVEQNDYENNHYAKEFGISIDDKLASVEARVLPAPWLKYHDTGREKEYLPQVGQWNMMNKKVINGSIVRYWACINFSRGVQQSTARGFCQQLVQMCQISGMEFSQDPVIPIHTARPDQVKKALKYVHSSALDKLEGKELELLIAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKINRQYLANLALKINVKMGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDSSPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKCWKDPQRGVVYGGMIKDGVSEGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRHHTRLFSSNHDDRNSTDRSGNILPGTHFLLQILYLRPISGRVNNVRWWILRSVILQNLTFIYAVMQEYRYARCTRSVSVVPPAYYAHLAAYRARFYMEPDVHENNAANKARGERSKDGSVRPLPALKDKKKEQGGGWGMVGAGGTNHFINHLLFLIFS 848
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0742 848 Pfam N-terminal domain of argonaute 79 212 IPR032474 -
Lele19g0742 848 Gene3D - 390 563 - -
Lele19g0742 848 Gene3D paz domain 245 364 - -
Lele19g0742 848 Pfam Argonaute linker 2 domain 360 398 IPR032472 -
Lele19g0742 848 MobiDBLite consensus disorder prediction 1 15 - -
Lele19g0742 848 CDD Piwi_ago-like 371 787 IPR045246 -
Lele19g0742 848 ProSiteProfiles PAZ domain profile. 251 365 IPR003100 GO:0005515
Lele19g0742 848 CDD PAZ_argonaute_like 250 359 - -
Lele19g0742 848 MobiDBLite consensus disorder prediction 16 31 - -
Lele19g0742 848 MobiDBLite consensus disorder prediction 796 826 - -
Lele19g0742 848 SMART PAZ_2_a_3 255 386 IPR003100 GO:0005515
Lele19g0742 848 Gene3D - 569 724 IPR036397 GO:0003676
Lele19g0742 848 Pfam PAZ domain 255 362 IPR003100 GO:0005515
Lele19g0742 848 SUPERFAMILY Ribonuclease H-like 488 789 IPR012337 -
Lele19g0742 848 Pfam Piwi domain 501 716 IPR003165 GO:0003676
Lele19g0742 848 MobiDBLite consensus disorder prediction 1 32 - -
Lele19g0742 848 SUPERFAMILY PAZ domain 246 361 IPR036085 GO:0005515
Lele19g0742 848 MobiDBLite consensus disorder prediction 796 824 - -
Lele19g0742 848 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 361 789 - -
Lele19g0742 848 Pfam Mid domain of argonaute 409 486 IPR032473 -
Lele19g0742 848 FunFam Protein argonaute-2 244 366 - -
Lele19g0742 848 SMART Piwi_a_2 500 788 IPR003165 GO:0003676
Lele19g0742 848 Gene3D - 739 823 IPR036397 GO:0003676
Lele19g0742 848 ProSiteProfiles Piwi domain profile. 500 788 IPR003165 GO:0003676
Lele19g0742 848 FunFam Argonaute 10 390 563 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele19g0742 Lele-ChrLele19 4367773 4375862 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0742 67 821 Eukaryotic Initiation Factors Gene Family AT5G43810 60.652 0.0 1055
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0824 17 19642480 19648338 Lele19g0742 19 4367773 4375862 hybridization
Lele18g0701 18 4277462 4283986 Lele19g0742 19 4367773 4375862 hybridization