Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0741 ATGACGATTGACGACGAGAGCTCCATATACGTTGGAGGTCTTCCCTACGATGCCACCGAAGATACCATCCGTACCGTTTTTGATCTCTATGGCGCCATTCTTGATGTCAAGATTATTAATGATGTCCGGACTAGGGGCAAGTGCTATTGTTTTGTAACTTTCACAAATCCTCGATCAGCAATTGATGCGATCAATGACATGAATGGAAGGACCATTGATGGGCGTATGGTTAAAGTAAATGGGGTAAGGACTCGATGTGGAAGATCAAATTTTGGTAGGGAACCTATTCATCATGATACTGATAGGAGTGGAGACTGGGATCGTGATAGAGATCGAGACCGAGATTATGATCATGACAGGGATAGGCACAGGAATCGAAATAGTGATTGGTCTCAAGAGCGTGATAGATCTCGAGAGCATGATAGACCTCGAGACTTTGAGCATGAAGGGGATAGAAGATATGAGCATGCACATTATCATGATCAAGAAAGAGAACCTTTGCGTGTTAAAGATCAAAGTCAAGAGAGACATCAGGTAGATGATGAACAAGAACACAGCAAAGCACTTGGTCAAGCTACACAAAGAGACTATAACCTATACTACGATACAGACAGGAAGATGGACAGGACTTATGATCCAGACAGAAGTTTTGATGGGGATAGAAATGAACGCTCAAGGAGAAACAATGGATTGAATGTTACAAAACAACCTAACGTGGATTTTTCATCAGACTCCAATGGTTACCACAGTGATGAGATTGCAGATCAATTAGATAGGTCAACTCAAAGGCTTGGTCAACTGAAAAAAGAGGTCTCGCAGTTGGAAGAGAAGTTACAAGAGAAACGACATCTTGTTATGGATTTACAAAAGCAATCTAGGAAACTGGAGGATGCATTAATTAACGCGAAGAAACATTCTTCATATCGTCAGATGCAGTTGACCAAGCTGCACAAATGTTTTCAGCAAGTGAAAGATTACACAGAGCGACTAAGAACCTGTGAAAAAGAACTTCAGACTATGGTTGATACGGCAATGCTAGAGAGTGATGGTGATGGCGAAGCTGTTGGCTTAAAGGATGTACAGATGATAAGTTGA 1095 0.4155 MTIDDESSIYVGGLPYDATEDTIRTVFDLYGAILDVKIINDVRTRGKCYCFVTFTNPRSAIDAINDMNGRTIDGRMVKVNGVRTRCGRSNFGREPIHHDTDRSGDWDRDRDRDRDYDHDRDRHRNRNSDWSQERDRSREHDRPRDFEHEGDRRYEHAHYHDQEREPLRVKDQSQERHQVDDEQEHSKALGQATQRDYNLYYDTDRKMDRTYDPDRSFDGDRNERSRRNNGLNVTKQPNVDFSSDSNGYHSDEIADQLDRSTQRLGQLKKEVSQLEEKLQEKRHLVMDLQKQSRKLEDALINAKKHSSYRQMQLTKLHKCFQQVKDYTERLRTCEKELQTMVDTAMLESDGDGEAVGLKDVQMIS 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0741 364 MobiDBLite consensus disorder prediction 229 250 - -
Lele19g0741 364 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 77 IPR000504 GO:0003723
Lele19g0741 364 MobiDBLite consensus disorder prediction 90 189 - -
Lele19g0741 364 Gene3D - 2 94 IPR012677 -
Lele19g0741 364 SMART rrm1_1 8 80 IPR000504 GO:0003723
Lele19g0741 364 MobiDBLite consensus disorder prediction 86 251 - -
Lele19g0741 364 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 99 - -
Lele19g0741 364 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Lele19g0741 364 Coils Coil 250 305 - -
Lele19g0741 364 SUPERFAMILY RNA-binding domain, RBD 4 109 IPR035979 GO:0003676
Lele19g0741 364 PANTHER GEO13361P1-RELATED 6 227 - -
Lele19g0741 364 CDD RRM_SF 9 80 - -
Lele19g0741 364 Coils Coil 323 343 - -
Lele19g0741 364 MobiDBLite consensus disorder prediction 199 228 - -
Lele19g0741 364 Pfam DivIVA protein 240 306 IPR007793 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0741 Lele-ChrLele19 4353066 4356208 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0741 7 73 Eukaryotic Initiation Factors Gene Family AT2G23350 32.836 4.65e-07 49.7