Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0740 ATGGCTTCTTCTTCTGAACTAAGCCTGGATTGCAAACCCCACAGCTATTCTTTGCTTCTGAAATCATTTGGAGATCAGGCTGATCATACCTACAAGCTTGAGGAGTTCCTTTCTCGCCTCGAGGAAGAACGTCTCAAGATTGATGCCTTCAAGCGCGAGCTCCCTCTCTGCATGCAGCTTCTTACCAACGCTATGGAGGCCTCAAGGCAGCAACTTCAGGCCTACAGATCAGCAAATCAAGGCACGAAGACGAGGCCAGTGCTAGAAGAATTCATCCCCGTGAAGCAATCAACCTCTGAAAGCTCTGAGAAGGCATCCAACGTATCAGACAAGGCAAATTGGATGACATCTGCTCAATTATGGAGCCAAGCAAATGAAGGGACCAAGCCCCAATCCACAATCACATCCCCAAAAGAAGCTGATATTGGTTTCAGTGTGAGCCCTAAGCTAGCTCTTGACAACAAACAGAGGAATGGTGGAGCCTTCCTGCCATTCTCAAAAGAACGAAACTCATCATCATGTCAAAGTGGCTCCACCACCACATTACGGGTCTTCCCAGAGTTGGCTCTCGCCTCCGTTGATGAGAAAGAGATGGAGGATAATAAGAAATGCGCAGAACCAGAAAATGCAGTGTCATGTCCAAATAAGAGGGAAAATTCTGGTAAAGCCGCCGGAGGCAACAGTACAGGAGTGGTGGTCATTGAACAAGGAAAAGGAGCTCCAGTTTCATCTGATCCACAAACCACCAACACCAACACCACTAACCAAACTCATCGGAAGGCAAGAAGATGCTGGTCACCTGACCTGCACCGCCGATTTGTAAATGCTCTTCAGATGCTAGGTGGATCTCAAGTGGCTACCCCAAAGCAGATAAGGGAGCTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATCTCCAGAAATATAGGCTTCATACACGCCGTCCCAGTCCAGGCCCACAAGCAGCCGGGTCACCCGCACCTCAGCTCGTTGTCCTAGGAGGGATCTGGGTCCCACCGGAATACGCTGCCGCTGCCGCTCACACTGGCGCACCTGCCATCTATAGCCCACACCCTTCATCCCACGCGCCGCCGCCTCCGCACTACTGTACCACAACGCCAGTGCATCAAGAATTCTACGCTGCCGCTGCGGCTTCGCGGCCAGCTCCGCCGCACTACCAAACGCTGCTCCATCACCATCTGCAGATGTACAAAACGAACTCGCACCAGGGCTCGCCGGAATCGGAGATGCGAGAAGGGGTAGAGAGGTCGGAGAGCATAGAGGATGGGAAGTCGGAGAGCAGCAGCTGGAAGGGAGATAGCGGGGACAACGAAGGGAAGAGAAAAGGGCTGACGGCACTGAGAGAAGGAGAAGAGAGTAGTCGGAGCGAGATGACTCTGAAATTTTAG 1419 0.518 MASSSELSLDCKPHSYSLLLKSFGDQADHTYKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAMEASRQQLQAYRSANQGTKTRPVLEEFIPVKQSTSESSEKASNVSDKANWMTSAQLWSQANEGTKPQSTITSPKEADIGFSVSPKLALDNKQRNGGAFLPFSKERNSSSCQSGSTTTLRVFPELALASVDEKEMEDNKKCAEPENAVSCPNKRENSGKAAGGNSTGVVVIEQGKGAPVSSDPQTTNTNTTNQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPGPQAAGSPAPQLVVLGGIWVPPEYAAAAAHTGAPAIYSPHPSSHAPPPPHYCTTTPVHQEFYAAAAASRPAPPHYQTLLHHHLQMYKTNSHQGSPESEMREGVERSESIEDGKSESSSWKGDSGDNEGKRKGLTALREGEESSRSEMTLKF 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0740 472 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 260 315 IPR006447 GO:0003677
Lele19g0740 472 Coils Coil 58 78 - -
Lele19g0740 472 MobiDBLite consensus disorder prediction 241 260 - -
Lele19g0740 472 Pfam Myb-like DNA-binding domain 262 313 IPR001005 -
Lele19g0740 472 SUPERFAMILY Homeodomain-like 257 318 IPR009057 -
Lele19g0740 472 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 257 317 IPR017930 -
Lele19g0740 472 MobiDBLite consensus disorder prediction 199 262 - -
Lele19g0740 472 Gene3D - 259 317 - -
Lele19g0740 472 MobiDBLite consensus disorder prediction 409 472 - -
Lele19g0740 472 MobiDBLite consensus disorder prediction 418 472 - -
Lele19g0740 472 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 20 441 IPR044787 GO:0003700|GO:0006355
Lele19g0740 472 FunFam Myb family transcription factor 259 317 - -
Lele19g0740 472 Coils Coil 33 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0740 Lele-ChrLele19 4348502 4350720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0740 1 472 G2-like Transcription Factor Family AT2G03500 49.697 1.33e-132 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele19g0740 Myb_DNA-binding 1e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1224 21 15264762 15285512 Lele19g0740 19 4348502 4350720 CCT
Lele17g0826 17 19665969 19668102 Lele19g0740 19 4348502 4350720 hybridization
Lele18g0699 18 4260078 4262287 Lele19g0740 19 4348502 4350720 hybridization