Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0729 ATGTCATCATCAAGTGGAATCGTTTGGAGCTATGAAGAAGAAAAGGCGTTTGAGAATGCCATCGCAATGCATTGGGTTGAAGAAGACTCAGAAGAACAATGGGAGAAGATTTCATCAGCTGTTCCCAGCAAAAGCATGGAGGAATTGAAGCAACATTACAAATTGTTATTAGAAGATGTAAGTGCAATAGAGGCAGGCCATATTCCACTCCCAAATTATACTGGTGGAGAAGAAGCTACTTCTTCAAGTAAGGAATTGCATGCTTCTTCTTCCAAGACTTCCACCTCAGAAAAAAGATCTAATTGCAATTTCAGAACTGGGTTGGGACATGACTCTTCTGGGCATAATACTGGTAAAGCAGGCTCTTCAAGATCTTCAGAACAAGAAAGGCGAAAAGGAATCCCCTGGACAGAAGAGGAGCATAGGCTATTTCTACTTGGTCTTGACAAATTTGGGAAGGGAGATTGGAGGAGTATATCAAGGAACTTTGTGATGTCTAGAACTCCAACTCAAGTGGCAAGCCACGCACAGAAGTACTTTATAAGGTTGAACTCCATGAACAGAGATAGGAGAAGATCAAGCATCCATGACATAACAAGTGTGAACAACGGAGATGTGGCAAATAACCAGGCTCCAATAACAGGGCAACACACAAACACAAACCCATCAAGCACAATTGGTGTAAGTCAATCTGTGAAACACAGGGCTCATCAACCCCATATACCTGCTGGTTTAGGGATGTATGGTGCACCAGTAGGGCACCCTGTGGCTGCTCCTCCAGGTCATATGGCTTCTGCTGTAGGGACCCCTGTGATGATGCCACCTGGACCCCATCCTCATCCTCATCCTCCTTATGTTGTTCCAATGGCTTACCCTATGGCATCTCCAGCAATGCACAGATGA 903 0.4452 MSSSSGIVWSYEEEKAFENAIAMHWVEEDSEEQWEKISSAVPSKSMEELKQHYKLLLEDVSAIEAGHIPLPNYTGGEEATSSSKELHASSSKTSTSEKRSNCNFRTGLGHDSSGHNTGKAGSSRSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVMSRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVANNQAPITGQHTNTNPSSTIGVSQSVKHRAHQPHIPAGLGMYGAPVGHPVAAPPGHMASAVGTPVMMPPGPHPHPHPPYVVPMAYPMASPAMHR 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0729 300 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 132 182 IPR006447 GO:0003677
Lele19g0729 300 SUPERFAMILY Homeodomain-like 9 63 IPR009057 -
Lele19g0729 300 MobiDBLite consensus disorder prediction 75 123 - -
Lele19g0729 300 FunFam Transcription factor SRM1 1 70 - -
Lele19g0729 300 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Lele19g0729 300 Gene3D - 134 186 - -
Lele19g0729 300 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Lele19g0729 300 PANTHER TRANSCRIPTION FACTOR KUA1 5 295 - -
Lele19g0729 300 SUPERFAMILY Homeodomain-like 130 185 IPR009057 -
Lele19g0729 300 ProSiteProfiles Myb-like domain profile. 9 57 IPR001005 -
Lele19g0729 300 FunFam transcription factor MYB1R1 134 185 - -
Lele19g0729 300 Gene3D - 2 70 - -
Lele19g0729 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Lele19g0729 300 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Lele19g0729 300 CDD SANT 135 180 IPR001005 -
Lele19g0729 300 CDD SANT 9 57 IPR001005 -
Lele19g0729 300 MobiDBLite consensus disorder prediction 73 135 - -
Lele19g0729 300 SMART sant 132 182 IPR001005 -
Lele19g0729 300 SMART sant 5 59 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0729 Lele-ChrLele19 4248309 4249423 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele19g0729 Myb_DNA-binding 2.5e-05 CL0123