Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0727 ATGTTTCCTTCCAACCCTTTTCCCTTTGACAGCAACCTTATCTCCACGCAACAAAGCCTTCCTCCTCCTCCTTTCTCCTTTCTTCACTTCCCTCCTCCTTTTGAAGACCACGAAATCATCCTCCCTCATCATGACCACCTCTTACTTCATCATCATCAATCACAACCTCTAGCTGAAGCAGCTAGTGCCAGCATGGAGGTTTCGAACAAGAATGAGCAGATCCCGGTAAGGAATAAGAGGATTTGCAAGAGAGATAGGCACAGCAAGATCAAGACGGCTAAAGGGCTAAGAGATCGGAGAATGAGACTTTCTCTGGAAGTAGCCAAGAGATTCTTTGGTCTTCAAGACATTCTTGGCTTTGACAAGGCCAGCAAAACCGTTGAGTGGCTGCTGAATCAGTCAAAGGACGAGATCAAACAGCTAGCAATGGACAAGAATTACAATAATTGCAGTGGGAACAATAGTGGGGCGAAGAGTGCATCTTCAACTTCAGATTGTGAAGGGGCGTCAAGTTTGGACGAGGTGGCATTAAGTGGAATGAATCAAGAGCAAGAGGGAGATCAACGTTCCTTACTGGTGAAGAGAAGGACAAAAAATACAAGAAAGAGTGCACTATTGGATCCTCTAATTGCAAGGGAGTCAAGGGAAAAGGCTAGAGAGAGGGCAAGAGAGAGGACAAGGCAGAAGCAGAAGATGAACATGAAAAGTCGCAAATCATTGCCAGCAGCTGATGACAACACAACCAACCATAATTGTAACCTCACCCAATTTGGTTCATGGAATACGTTTGAAACAGGAGAAAAGGTGAATAATCCCTCCTTGGAGATGATGGCTGAGGCTGCTGAAGATGAACGAAGCTCTCAGGCTAAGGATGACGAATCCTTGGCGGTTAATATGGGCAAATGGAGCCCATCCATGATATTCAACTCATTGAATACTTCATCTACATTCCTACAAGATCATCATCAATTTGCGGAATTTCAGTCAATGGCAAAACTTTGGGAGGCCTACAACAATCACATGATGATCTAA 1032 0.4448 MFPSNPFPFDSNLISTQQSLPPPPFSFLHFPPPFEDHEIILPHHDHLLLHHHQSQPLAEAASASMEVSNKNEQIPVRNKRICKRDRHSKIKTAKGLRDRRMRLSLEVAKRFFGLQDILGFDKASKTVEWLLNQSKDEIKQLAMDKNYNNCSGNNSGAKSASSTSDCEGASSLDEVALSGMNQEQEGDQRSLLVKRRTKNTRKSALLDPLIARESREKARERARERTRQKQKMNMKSRKSLPAADDNTTNHNCNLTQFGSWNTFETGEKVNNPSLEMMAEAAEDERSSQAKDDESLAVNMGKWSPSMIFNSLNTSSTFLQDHHQFAEFQSMAKLWEAYNNHMMI 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0727 343 MobiDBLite consensus disorder prediction 203 250 - -
Lele19g0727 343 ProSiteProfiles R domain profile. 212 229 IPR017888 -
Lele19g0727 343 Coils Coil 215 235 - -
Lele19g0727 343 ProSiteProfiles TCP domain profile. 83 141 IPR017887 -
Lele19g0727 343 Pfam TCP family transcription factor 83 232 IPR017887 -
Lele19g0727 343 MobiDBLite consensus disorder prediction 208 229 - -
Lele19g0727 343 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 58 342 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0727 Lele-ChrLele19 4229314 4230597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0727 79 240 TCP Transcription Factor Family AT3G18550 48.851 3.95e-33 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lele19g0727 TCP 1.9e-44 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0840 17 19776228 19777514 Lele19g0727 19 4229314 4230597 hybridization
Lele18g0684 18 4146641 4147937 Lele19g0727 19 4229314 4230597 hybridization