Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0717 ATGCCGCTGACGTTTCTAGCTGAATGCTTGAATTCATTGGACAGCTCCACAAACCACAAAGTAACCCCTCCCGTTTTTGGAATGAAAAAATTGGCCGTAATCGCATGCGAGCGAAAACTTGATCTCTTATCCAGACCATCATGTCCATCTCTGATAAATCCATATATCAACGATGTCCTCCCTACTCCTGTTTCTGATCTTACAGCAACGCGGATCGTCGATCGGTTGACCCGTCATCTATTCTCGTCGATAAACTTGTGTTCATCATCCTTCTTGATTCGACCTGGTGAAAATATGGATTCGATGGACATCGTTGGGAAATCAAAGGAAGACGCTTCCCTTCCTAAAGCAACTATGACAAAAATTATCAAAGAGATGTTACCCCCTGATGTACGTGTTGCAAGAGATGCACAAGATCTATTGATTGAATGCTGTGTAGAGTTTATAAACCTTGTTTCATCAGAGTCCAATGAAGTCTGTAATAGAGAGGATAAACGGACAATTGCACCAGAGCATGTATTGAAGGCTTTACAGGTTCTTGGATTTAGTGAGTACATTGAGGAAGTTTATGCAGCATACGAGCAGCATAGGATTGAGACCATGGACTCTTTAAGAGCGGGCAAGTGGAGCAATGGAGCCGAGATGACTGAGGAGGAAGCATTACTGGAGCAGCAAAGGATGTTTGCAGAGGCGCGTGCTAGAATGAACGGTGGGGCCATTGCACCAAAGCAGCCAGATGCCGACCAAACTTTAGATAGCTAA 762 0.4423 MPLTFLAECLNSLDSSTNHKVTPPVFGMKKLAVIACERKLDLLSRPSCPSLINPYINDVLPTPVSDLTATRIVDRLTRHLFSSINLCSSSFLIRPGENMDSMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNREDKRTIAPEHVLKALQVLGFSEYIEEVYAAYEQHRIETMDSLRAGKWSNGAEMTEEEALLEQQRMFAEARARMNGGAIAPKQPDADQTLDS 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0717 253 Gene3D Histone, subunit A 102 239 IPR009072 GO:0046982
Lele19g0717 253 FunFam Negative cofactor 2 beta 104 240 - -
Lele19g0717 253 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 112 177 IPR003958 -
Lele19g0717 253 SUPERFAMILY Histone-fold 110 239 IPR009072 GO:0046982
Lele19g0717 253 PANTHER PROTEIN DR1 HOMOLOG 99 252 IPR044255 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0717 Lele-ChrLele19 4159743 4164796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0717 99 249 CCAAT-DR1 Transcription Factor Family AT5G23090 83.766 3.78e-90 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele19g0717 CBFD_NFYB_HMF 1e-21 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0850 17 19842046 19847022 Lele19g0717 19 4159743 4164796 hybridization
Lele18g0676 18 4078530 4081921 Lele19g0717 19 4159743 4164796 hybridization