Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0713 ATGTCATCGTCGCCGTCGATGATTCTACAGCCGGAGCAGCAGCAACAGGCAGGTCCCGGAGATGCGCAGATGCCGGCTATGACTACTCCGGAAGTTGTACCCACAGCTAGTGCCTGGGAATCTTCTGGTTCTATTGGTCCTTTCTTTGCTGTTATTTCTGTGCTTACTGTTCTCGCTGTGATTTCCTGCTATTTGGGACGAAAGTGGAACCCTAGCCCTATGACCGCTTTGGAGAGCATTGATAATGACAACAGAAGCTGTTCTGGCTGGCTCAAGTTCTTGCGTCATCCATGTATACCAATGCTGGTTCAAGTTAAGAACGTTAAATCGCCGGCGATTCTGGCTTCTGCTAATAAAGATGATTGTAAAGTTGAAGAAGAAACGTTATCCACAGAGCTGAGAAACGAGGGTCGTTTTCATCATTTAGATCTGGAGATGTCGTACGCTTTAACAGAAAGATCGCTCACATTGAGATATATTGAGATGTCGTCAAAGCTTCTCCATGTAGATCAGCTTAAGCAACTAAGGGAAGTTTTTGTTCGATTTGACATGGACTCCGACGGCAGCCTGACCGTCCTAGAGCTAGCGGCGCTCCTCCGCTCGCTTGGCCTGAAGCCCACCGGAGATAAAATCCACGCGCTGTTAGCCACCATGGACTCCAATGGCAATGGCTTGGTGGAGTTCGATGAATTGGTGAAAGCGATACTGCCAGACTTGAGGAAAGAAGAGGTAATCGTGAATCAAGAGAAGCTTCTAGAGGTTTTCAAGTGCTTCGATCGCGACGGAAATGGGTACATATCGGCGGCGGAGTTAGCGAGAGCAATGGCCAAAATGGGCCAGCCTCTCACTTACAGAGAACTCACACAGATGATCAAAGATGCCGATGAAGACGGCGACGGTGTGATTAGCTTCAGTGAGTTTGCCAACGTAATGGCCAAGTCCGCCTCTGATTTCTTTGGCCTTTCATCGCCATAA 975 0.4851 MSSSPSMILQPEQQQQAGPGDAQMPAMTTPEVVPTASAWESSGSIGPFFAVISVLTVLAVISCYLGRKWNPSPMTALESIDNDNRSCSGWLKFLRHPCIPMLVQVKNVKSPAILASANKDDCKVEEETLSTELRNEGRFHHLDLEMSYALTERSLTLRYIEMSSKLLHVDQLKQLREVFVRFDMDSDGSLTVLELAALLRSLGLKPTGDKIHALLATMDSNGNGLVEFDELVKAILPDLRKEEVIVNQEKLLEVFKCFDRDGNGYISAAELARAMAKMGQPLTYRELTQMIKDADEDGDGVISFSEFANVMAKSASDFFGLSSP 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0713 324 ProSiteProfiles EF-hand calcium-binding domain profile. 170 205 IPR002048 GO:0005509
Lele19g0713 324 ProSitePatterns EF-hand calcium-binding domain. 219 231 IPR018247 -
Lele19g0713 324 CDD EFh 174 235 IPR002048 GO:0005509
Lele19g0713 324 Gene3D - 243 319 - -
Lele19g0713 324 MobiDBLite consensus disorder prediction 1 27 - -
Lele19g0713 324 MobiDBLite consensus disorder prediction 1 22 - -
Lele19g0713 324 ProSiteProfiles EF-hand calcium-binding domain profile. 282 317 IPR002048 GO:0005509
Lele19g0713 324 FunFam probable calcium-binding protein CML18 242 318 - -
Lele19g0713 324 ProSitePatterns EF-hand calcium-binding domain. 295 307 IPR018247 -
Lele19g0713 324 ProSitePatterns EF-hand calcium-binding domain. 183 195 IPR018247 -
Lele19g0713 324 FunFam Probable calcium-binding protein CML15 160 240 - -
Lele19g0713 324 CDD EFh 250 312 IPR002048 GO:0005509
Lele19g0713 324 ProSiteProfiles EF-hand calcium-binding domain profile. 206 241 IPR002048 GO:0005509
Lele19g0713 324 ProSiteProfiles EF-hand calcium-binding domain profile. 246 281 IPR002048 GO:0005509
Lele19g0713 324 PANTHER CALCIUM BINDING PROTEIN 247 311 - -
Lele19g0713 324 SUPERFAMILY EF-hand 167 312 IPR011992 -
Lele19g0713 324 SMART efh_1 210 238 IPR002048 GO:0005509
Lele19g0713 324 SMART efh_1 286 314 IPR002048 GO:0005509
Lele19g0713 324 SMART efh_1 174 202 IPR002048 GO:0005509
Lele19g0713 324 SMART efh_1 250 278 IPR002048 GO:0005509
Lele19g0713 324 ProSitePatterns EF-hand calcium-binding domain. 259 271 IPR018247 -
Lele19g0713 324 Gene3D - 154 242 - -
Lele19g0713 324 Pfam EF-hand domain pair 249 311 IPR002048 GO:0005509
Lele19g0713 324 Pfam EF-hand domain pair 173 235 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0713 Lele-ChrLele19 4137402 4139414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0713 170 321 EF-hand Containing Proteins AT1G18530 76.974 4.80e-84 249
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele19g0713 19 4137402 4139414 Lele21g1974 21 26718368 26724709 CCT
Lele19g0713 19 4137402 4139414 Lele22g1937 22 24067879 24070693 CCT
Lele19g0713 19 4137402 4139414 Lele23g0040 23 251589 254497 CCT
Lele19g0713 19 4137402 4139414 Lele24g1885 24 23626888 23629676 CCT
Lele17g0853 17 19871543 19873578 Lele19g0713 19 4137402 4139414 hybridization
Lele18g0672 18 4046754 4049456 Lele19g0713 19 4137402 4139414 hybridization