Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0704 ATGGGGTGCTCGTTTTCTGGGTTGAATGCTCTCTACGACGCCGTTAATGGAGGAGGGGATGTCTGGATCAATGAGAACCGATTCCGAATCGTGAGGCAGCTCGGGGAAGGCGGATTCGCCTTCGTTTATTTGGTTAAGGAGATGGTTGCTGACTCCTCTCCCGCCTCTGCTGGCACTGGTCTTTCTAAGAAGCTCAAAGACTCCTCTCATGTCTCTGAAGATGGAATTTATGCTATGAAAAAGATCCTCATTCAGAATAGCGAACAGTTGGAGTTGGTGAGGGAGGAGATCCGGGTTTCATCGCTGTTTAGTCATCGAAATCTGCTCCCACTTCTTGACCAAGCAATCATCTCTGTTAAGCCTACCCAAGAAACATCTTGGAACCATGAAGCATACTTGATATTTCCAGTTCATTTGGATGGAACGTTGCTAGACAATGCCAAAACAATGCAAGCCAAGAAGGAGTTCTATTCTACCTCTGATGTTCTTCAAATATTTCGGCAGCTTTGTGCAGGACTCGAGCATATGCACAGTTTTGATCCTCCATATGCCCATAATGATGTCAAACCTGGAAATGTTCTGATAACACATAGGAAAGGTCAGTCGCCTCTTGCCATACTGATGGATTTTGGCAGTGCACGACCTGCCAAGAGGCAAATTCGCTCCCGACAAGAGGCATTACAGCTACAGGAATGGGCAGCTGAACACTGCTCTGCTCCTTTCCGTGCTCCTGAGCTGTGGGATTGCCCAAGCCATGCTGATATTGATGAAAGGACTGATATTTGGTCACTGGGATGCACATTATATGGCGTATCTCCATTTGAATATGCACTTGGAGAATCTGGAGGAAGCCTGCAATTGGCCATTGTAAATGCTCAGGTCAAGTGGCCAGCCGGACCTAAGCCTCCATACCCAGAAGCTCTTCATCAGTTTGTGACATGGATGCTTCAGCCTCAGGCTGCTGTGAGGCCCCGGATAAATGATATTGTTATCCACGTGGATAAGCTGATTGCAAAAATGATGAAAATGGACTATGGTGGTGGCTATTCCTGTAGTTTGGTACGCCTCTGTGATTCTTGCAGATGGTCTGCTTCCACGCTTTACTGTCACACCGATTCAGCGTACCTCTGTTCTTCCTGCGATGGACAAATTCACGCTCTGGGGTCTCCTTGTTGGGCCCACCATCGTGTGAATCTTTGCGGCACATGTAAGAACGCTCCGGTGGCTTTCACCTGCAAGGCCGATGATGCTTCGCTATGTGTCCACTGTGACTTTGAAATTCACTCTGCAAACCCAATCGCTAGCCGACACAACAGAGTCCCTGCGTCTCCCCTGTCTCATATACTCAACGACAAAGTAGCAACTCCCGATGACCAGCCTAATTACGAGGTTGTCCACAACAACAACGTAAATAGCAAGGAAATGGACGAGCGAGAAACTGAATCGTGGTTACTGCTTGATTCTGCTGATACCATAGACAGCCAGGTTGATGATGGGTTTAAGTTCGGAGAAACAGAGGATGATCACCATGCGGACGTGGGGCTTGTTGAAGAGCGCGATTCATCCACTAAGTTCAAAAATTTCCAGGAAGATCATGAACAGGGGCAGCAAACTTACAGCTTTTCTGAAGAGATGAACGAAAGTGACAGTGTTGTGCCAGTTCAATCGGTTGAAGCTCAGCCTAAGAAGCAATTTCAGCCACAACAGCAGCAGCAGGAGCAGAATATCTACTTCAATATGGAGCAGAAGCCATCAAGATCAATGGCTTTCACTAATTACGCCTTCAATTGCCGGAGCGTGTCTGTTCCATATGTGGATGCTCAAATGCTGCAAAGAGGGACGACGAGTGGCATGCCAGCAGGGTACAGATTTGCCAAAGGAACAGAGATATTTACAAGTGCTTCTTCCGTTCCAATGCAAATCCTCTTTGGGGAGATGAACAGGAAAGCTGGAGTGGAGAAATACAGAGAGAAGAAGAAATCTAGAAAGTTCGAGAAGAGAATCAGATATGCTTACAGGAAAGCCTACGCTGAGAAACGACCCAGAGTTAAGGGCAGATTTGTTAAGAGACAAGACTTAACTTCAGATGAAGCTGTGCCTCTCCCCTGA 2109 0.4713 MGCSFSGLNALYDAVNGGGDVWINENRFRIVRQLGEGGFAFVYLVKEMVADSSPASAGTGLSKKLKDSSHVSEDGIYAMKKILIQNSEQLELVREEIRVSSLFSHRNLLPLLDQAIISVKPTQETSWNHEAYLIFPVHLDGTLLDNAKTMQAKKEFYSTSDVLQIFRQLCAGLEHMHSFDPPYAHNDVKPGNVLITHRKGQSPLAILMDFGSARPAKRQIRSRQEALQLQEWAAEHCSAPFRAPELWDCPSHADIDERTDIWSLGCTLYGVSPFEYALGESGGSLQLAIVNAQVKWPAGPKPPYPEALHQFVTWMLQPQAAVRPRINDIVIHVDKLIAKMMKMDYGGGYSCSLVRLCDSCRWSASTLYCHTDSAYLCSSCDGQIHALGSPCWAHHRVNLCGTCKNAPVAFTCKADDASLCVHCDFEIHSANPIASRHNRVPASPLSHILNDKVATPDDQPNYEVVHNNNVNSKEMDERETESWLLLDSADTIDSQVDDGFKFGETEDDHHADVGLVEERDSSTKFKNFQEDHEQGQQTYSFSEEMNESDSVVPVQSVEAQPKKQFQPQQQQQEQNIYFNMEQKPSRSMAFTNYAFNCRSVSVPYVDAQMLQRGTTSGMPAGYRFAKGTEIFTSASSVPMQILFGEMNRKAGVEKYREKKKSRKFEKRIRYAYRKAYAEKRPRVKGRFVKRQDLTSDEAVPLP 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0704 702 CDD Bbox1_BBX-like 356 397 - -
Lele19g0704 702 ProSiteProfiles CCT domain profile. 648 690 IPR010402 GO:0005515
Lele19g0704 702 SMART bboxneu5 395 442 IPR000315 GO:0008270
Lele19g0704 702 SMART bboxneu5 352 390 IPR000315 GO:0008270
Lele19g0704 702 CDD Bbox1_BBX-like 399 441 - -
Lele19g0704 702 Gene3D Transferase(Phosphotransferase) domain 1 16 344 - -
Lele19g0704 702 Pfam Protein kinase domain 58 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele19g0704 702 Pfam B-box zinc finger 397 441 IPR000315 GO:0008270
Lele19g0704 702 ProSiteProfiles Protein kinase domain profile. 28 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele19g0704 702 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 3 340 - -
Lele19g0704 702 SMART serkin_6 28 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele19g0704 702 Pfam CCT motif 648 690 IPR010402 GO:0005515
Lele19g0704 702 CDD STKc_16 27 338 - -
Lele19g0704 702 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Lele19g0704 702 ProSiteProfiles Zinc finger B-box type profile. 352 399 IPR000315 GO:0008270
Lele19g0704 702 ProSiteProfiles Zinc finger B-box type profile. 395 442 IPR000315 GO:0008270
Lele19g0704 702 SUPERFAMILY Protein kinase-like (PK-like) 20 333 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0704 Lele-ChrLele19 4088276 4095375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0704 354 690 C2C2-CO-like Transcription Factor Family AT3G02380 39.359 4.41e-61 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Lele19g0704 Pkinase 4.1e-25 CL0016
TF C2C2-CO-like Lele19g0704 Pkinase 4.1e-25 CL0016