Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0698 ATGGAGAAGACCCATGCGAACAGGGGAAGGGTTTGCACTTCCCACAAATATGAAAGTATATTTCTCAAGAAAGACTGTACTTTAAGTGTTCAACGGAATAACTGGTTCTTCCGAGGAAGAACGCCTCGTAGCTCAGCTCACACAAAAATATCGTCTGTTCCGAGCTCCCCAAATAAACGACTCAAAACCCAAGACCAGGGGGACTCCGATCATAACCTCGACCTGCCACCTTCGTTCGACGATGAGCAGCCTGATTCTTGTGGAATTTGCAACGCCGACCATGGCACTTCAATCAGAGGTGAAATCGATTGTTGCACTCACCATTTTTGCTTCGTCTGCATCATAGAATGTTCCAACCATGAGTCTCAATGCCCCCTCTGTCGCCAAAGATTCTCCACCGTTGTCCGCCCCCCTAAGCCCGGCGTCTTCCCTTCCTCGCGTCTTGTTAAAGTCCCTATTCGTGACCAGGTTTACCATGTTCATAGAAATATCACGACAGGTCCTGCGGATCCTTATGCTGAAACTCGGGGTAGTGTCTGTAACGGTGAGCGAGATGAAAGCTTTCTTTTACTATGTGATCTTTGTGATACTGCTTCTCATACATATTGTGTTGGCCTTGGCTATGTTGTGCCTGAAGGTGATTGGTTTTGTAAAGATTGTTCTGTTCCCAGGGAAATTAGTGACAATATCTATGTAGAACATCAATGTGACATATCAGCAGCTGAGCCAAGTGTAACAATCCTTGATATTATTAGCATTCTATGTGCTCCCCGTCATGAAAATGGGGAGAGAAATTTTGCTAAGGAACAAAGTAGGTCTTCTAGTTTAGTAACTTCAATGGGTTCTGCTCCTTCTGATGGAAAGATTGGAAGTGCCTCTTCCTCAATCAGGGATGCAGGTGTCGATGCATTCAAGGAAATTGCTAGGCATTTGACCCACGCTATATTGGCCGTGTGTCAATCGGAGCACGAAAAGCTAGCCGCGTGTCGATCAGAGAATGAAAAGTTGGGCGCAAGCTCCTCGAGCTCTTTATGCTGTCACGGGTGA 1047 0.4613 MEKTHANRGRVCTSHKYESIFLKKDCTLSVQRNNWFFRGRTPRSSAHTKISSVPSSPNKRLKTQDQGDSDHNLDLPPSFDDEQPDSCGICNADHGTSIRGEIDCCTHHFCFVCIIECSNHESQCPLCRQRFSTVVRPPKPGVFPSSRLVKVPIRDQVYHVHRNITTGPADPYAETRGSVCNGERDESFLLLCDLCDTASHTYCVGLGYVVPEGDWFCKDCSVPREISDNIYVEHQCDISAAEPSVTILDIISILCAPRHENGERNFAKEQSRSSSLVTSMGSAPSDGKIGSASSSIRDAGVDAFKEIARHLTHAILAVCQSEHEKLAACRSENEKLGASSSSSLCCHG 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0698 348 MobiDBLite consensus disorder prediction 264 292 - -
Lele19g0698 348 SMART PHD_3 176 221 IPR001965 -
Lele19g0698 348 MobiDBLite consensus disorder prediction 45 62 - -
Lele19g0698 348 Pfam PHD-finger 179 221 IPR019787 -
Lele19g0698 348 MobiDBLite consensus disorder prediction 63 78 - -
Lele19g0698 348 PANTHER F18C1.6 PROTEIN 65 276 - -
Lele19g0698 348 SUPERFAMILY RING/U-box 78 142 - -
Lele19g0698 348 ProSiteProfiles Zinc finger RING-type profile. 87 128 IPR001841 -
Lele19g0698 348 MobiDBLite consensus disorder prediction 268 292 - -
Lele19g0698 348 ProSitePatterns Zinc finger RING-type signature. 105 114 IPR017907 -
Lele19g0698 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 163 IPR013083 -
Lele19g0698 348 SUPERFAMILY FYVE/PHD zinc finger 171 224 IPR011011 -
Lele19g0698 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 232 IPR013083 -
Lele19g0698 348 ProSiteProfiles Zinc finger PHD-type profile. 121 223 IPR019787 -
Lele19g0698 348 MobiDBLite consensus disorder prediction 45 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0698 Lele-ChrLele19 4054084 4057484 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0698 149 227 C2H2 Transcription Factor Family AT3G01460 32.500 9.73e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele19g0698 PHD 2.1e-09 CL0390