Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0688 ATGGGGAGGGGACGAGTACAGCTGAAGAGGATCGAGAACAAGATCAACAGACAAGTGACTTTCTCGAAGAGAAGGTCTGGTTTGCAGAAGAAAGCAAACGAGATCTCTGTCCTTTGTGATGCCGAGGTTGCTCTTATCGTCTTCTCCACCAAGGGCAAGCTTTCTCAGTACTCCAGCGACCCCTGCATGGAAAAAATTCTGGAACGCTATGAGAGGTATTCATATGCAGAAAGGCAACTAACTGCACCTGATGGCTCACCAACTGAAAACTGGACACTAGAGCACGCAAAGCTAAAGGCTAGGATGGAGGTCCTGCAAAGAAATCAAAAGAATTACATGGGACAAGAGCTGGAAGGCCTAAGTCTGAAAGAGCTTCAGAATTTGGAGCAACAGCTAGATAGCGCTCTCAAACATATCAGAACCCGCAAGAACCAACTCATGTATGAATCCATTTGTGAGTATCAGAAAAAGGATAAGAAACTGCAGGAACAAAACAACCTGCTGGTTAAGAAGATAAAGGAGAAAGAGAAGGCGATGGTGCAACAAAAGCAGAATCATGAACGAAATGAAGTCCTCGTACAACCACAATCTCCGCTCTCCAATATTGGAGGGTGCCTAGAAGATAACGAAGGAACAGCGAGTCAGGCTCGAGCCAGCACTTTGCTTCCCCCATGGATGCTTCCCCCCGTCAGTCAATGA 699 0.4649 MGRGRVQLKRIENKINRQVTFSKRRSGLQKKANEISVLCDAEVALIVFSTKGKLSQYSSDPCMEKILERYERYSYAERQLTAPDGSPTENWTLEHAKLKARMEVLQRNQKNYMGQELEGLSLKELQNLEQQLDSALKHIRTRKNQLMYESICEYQKKDKKLQEQNNLLVKKIKEKEKAMVQQKQNHERNEVLVQPQSPLSNIGGCLEDNEGTASQARASTLLPPWMLPPVSQ 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0688 232 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Lele19g0688 232 Pfam K-box region 88 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele19g0688 232 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele19g0688 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele19g0688 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele19g0688 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele19g0688 232 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele19g0688 232 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Lele19g0688 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele19g0688 232 Coils Coil 122 145 - -
Lele19g0688 232 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Lele19g0688 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 176 - -
Lele19g0688 232 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele19g0688 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele19g0688 232 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Lele19g0688 232 Coils Coil 158 189 - -
Lele19g0688 232 Coils Coil 88 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0688 Lele-ChrLele19 3997634 4001775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0688 1 213 MADS-box Gene Family AT1G26310 59.227 4.39e-90 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele19g0688 K-box 3.8e-26 No_clan