Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0687 ATGGGAAGAGGCAGAGTTGAGCTCAAGAGAATAGAGAACAAAATCAATAGGCAAGTTACATTCGCTAAGAGAAGAAATGGTCTGCTCAAGAAGGCTTATGAGCTCTCTGTCCTCTGTGATGCCGAAGTTGCCCTCATCATCTTCTCCAATCGTGGAAAGCTCTATGAGTTCAGTAGTGGCTCCAGCATGTCGAAAACACTGGAGAAGTACCAGAAATACAGCTACGGTGCACTGGAATCCAGCCAGCCAATGAGTGACACTCAGAGTAGCTATCAGGAATACTTGAGACTTAAAGCTAGGGTCGAAGTCCTGCAACGTTCGCAGAGGAACTTTCTTGGGGAAGATCTGGCCCAAATGAATACAAAGGAGCTGGAGCGGCTTGAGAATCAAGTTGAGGCAGCACTGAAGAATGTCAGGTCCACAAAGACTCAGTATTTGCTTGACCAGCTTGCTGATCTTCAGAACCGGGAGAAAGTGCTGGAGGAAACTAATAGAGCTTTGAGGAGTAAGCTTGGTTCTTGGAACAATGAAACACAGTTAGAAGAAAGAAGCAACTCGCAACAAGTTCCTCTAAGAATGGGATGGGACGGTGCAGGAGGGTCTGAGACGATCCATTACAGTCGCTTTGCTGTTCAGTCTGAAGCATTTTTTCAGCCTCTAGGAGTCAATCCCAATTTGCAAATCGGATATAATCATCAGGTGGGAGGGGAGGATATAAATGTTGGAGGAGCAGCATTGAACGTTCATGGATTCTTGCCTGGTTGGATGCTTTAA 774 0.4599 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSGSSMSKTLEKYQKYSYGALESSQPMSDTQSSYQEYLRLKARVEVLQRSQRNFLGEDLAQMNTKELERLENQVEAALKNVRSTKTQYLLDQLADLQNREKVLEETNRALRSKLGSWNNETQLEERSNSQQVPLRMGWDGAGGSETIHYSRFAVQSEAFFQPLGVNPNLQIGYNHQVGGEDINVGGAALNVHGFLPGWML 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0687 257 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele19g0687 257 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Lele19g0687 257 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele19g0687 257 Coils Coil 117 144 - -
Lele19g0687 257 Coils Coil 150 170 - -
Lele19g0687 257 ProSiteProfiles K-box domain profile. 87 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele19g0687 257 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 177 - -
Lele19g0687 257 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Lele19g0687 257 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele19g0687 257 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele19g0687 257 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele19g0687 257 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele19g0687 257 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele19g0687 257 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lele19g0687 257 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele19g0687 257 FunFam MADS-box transcription factor 1 13 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0687 Lele-ChrLele19 3987091 3991015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0687 1 257 MADS-box Gene Family AT5G15800 56.458 2.22e-93 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele19g0687 K-box 3.1e-26 No_clan